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Related Concept Videos

Reaction Mechanisms03:06

Reaction Mechanisms

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Chemical reactions often occur in a stepwise fashion, involving two or more distinct reactions taking place in a sequence. A balanced equation indicates the reacting species and the product species, but it reveals no details about how the reaction occurs at the molecular level. The reaction mechanism (or reaction path) provides details regarding the precise, step-by-step process by which a reaction occurs.
For instance, the decomposition of ozone appears to follow a mechanism with two steps:
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Energy Diagrams, Transition States, and Intermediates02:13

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Free-energy diagrams, or reaction coordinate diagrams, are graphs showing the energy changes that occur during a chemical reaction. The reaction coordinate represented on the horizontal axis shows how far the reaction has progressed structurally. Positions along the x-axis close to the reactants have structures resembling the reactants, while positions close to the products resemble the products.  Peaks on the energy diagram represent stable structures with measurable lifetimes, while...
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Determining Order of Reaction02:53

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Rate laws describe the relationship between the rate of a chemical reaction and the concentration of its reactants. In a rate law, the rate constant k and the reaction orders are determined experimentally by observing how the rate of reaction changes as the concentrations of the reactants are changed. A common experimental approach to the determination of rate laws is the method of initial rates. This method involves measuring reaction rates for multiple experimental trials carried out using...
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Radical Reactivity: Overview01:11

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Radicals, the highly reactive species, gain stability by undergoing three different reactions. The first reaction involves a radical-radical coupling, in which a radical combines with another radical, forming a spin‐paired molecule. The second reaction is between a radical and a spin‐paired molecule, generating a new radical and a new spin‐paired molecule. The third reaction is radical decomposition in a unimolecular reaction, forming a new radical and a spin‐paired...
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Multi-Step Reactions02:31

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Chemical reactions often occur in a stepwise fashion involving two or more distinct reactions taking place in a sequence. A balanced equation indicates the reacting species and the product species, but it reveals no details about how the reaction occurs at the molecular level. The reaction mechanism (or reaction path) provides details regarding the precise, step-by-step process by which a reaction occurs. Each of the steps in a reaction mechanism is called an elementary reaction. These...
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Cycloaddition Reactions: MO Requirements for Thermal Activation01:16

Cycloaddition Reactions: MO Requirements for Thermal Activation

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Thermal cycloadditions are reactions where the source of activation energy needed to initiate the reaction is provided in the form of heat. A typical example of a thermally-allowed cycloaddition is the Diels–Alder reaction, which is a [4 + 2] cycloaddition. In contrast, a [2 + 2] cycloaddition is thermally forbidden.
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Finding Reaction Pathways with Optimal Atomic Index Mappings.

Deb Sankar De1, Marco Krummenacher1, Bastian Schaefer1

  • 1Department of Physics, Universität Basel, Klingelbergstrasse 82, 4056 Basel, Switzerland.

Physical Review Letters
|December 7, 2019
PubMed
Summary
This summary is machine-generated.

This study introduces a novel computational method to efficiently discover complex chemical reaction pathways. The approach uses a biased potential energy surface and global optimization to rapidly identify key intermediate states and reaction pathways.

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Area of Science:

  • Computational Chemistry
  • Materials Science
  • Chemical Physics

Background:

  • Discovering complex reaction pathways is computationally prohibitive with current density-functional theory (DFT) methods.
  • Existing simulation techniques struggle with the vast number of energy evaluations and atomic mapping possibilities for intricate reactions.

Purpose of the Study:

  • To develop a novel computational approach for efficiently identifying complex reaction and transformation pathways.
  • To overcome the limitations of existing DFT methods in determining atomic mappings and exploring numerous intermediate states.

Main Methods:

  • A penalty function invariant under index permutations was employed to bias the potential energy surface.
  • Minima-hopping-based global optimization was performed on the biased potential energy surface to locate the global minimum (reaction product).
  • The method was validated on a Lennard-Jones cluster (LJ38) and applied to C60 and C20H20 systems.

Main Results:

  • The developed method successfully identified relevant intermediate states for the lowest energy reaction pathway in the benchmark LJ38 system.
  • Significantly fewer intermediate states were required compared to previous methods for pathway discovery.
  • Valuable insights into the synthesis of C60 and C20H20 molecules were obtained from the identified reaction pathways.

Conclusions:

  • The novel computational strategy enables rapid and efficient discovery of complex reaction pathways.
  • This approach significantly reduces the computational cost associated with exploring reaction mechanisms.
  • The method provides crucial information for understanding and designing synthetic routes for complex molecules.