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Updated: Dec 28, 2025

Targeted DNA Methylation Analysis by Next-generation Sequencing
Published on: February 24, 2015
DNA 5-Methylcytosine-Specific Amplification and Sequencing
Chang Liu1,2, Xiaolong Cui1,2, Boxuan Simen Zhao3
1Department of Chemistry, Department of Biochemistry and Molecular Biology, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States.
Abstract:
DNA 5-methylcytosine (5mC)-specific mapping has been hampered by severe DNA degradation and the presence of 5-hydroxymethylcytosine (5hmC) using the conventional bisulfite sequencing approach. Here, we present a 5mC-specific whole-genome amplification method (5mC-WGA), with which we achieved 5mC retention during DNA amplification from limited input down to 10 pg scale with limited interference from 5hmC signals, providing DNA 5mC methylome with high reproducibility and accuracy.
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