Related Experiment Video
Updated: Dec 24, 2025

3D Imaging of Soft-Tissue Samples using an X-ray Specific Staining Method and Nanoscopic Computed Tomography
Published on: October 24, 2019
Three dimensions, two microscopes, one code: Automatic differentiation for x-ray nanotomography beyond the depth of
Ming Du1, Youssef S G Nashed2, Saugat Kandel3
1Department of Materials Science, Northwestern University, Evanston, IL 60208, USA.
This study introduces a new reconstruction method for x-ray nanotomography that accounts for diffraction and multiple scattering in thick samples. The iterative optimization approach enhances 3D object reconstruction accuracy for advanced imaging techniques.
Area of Science:
- Computational Imaging
- X-ray Microscopy
- Materials Science
Background:
- Conventional X-ray nanotomography struggles with thick samples due to diffraction and multiple scattering.
- Advances in X-ray nanotomography necessitate new reconstruction methods for accurate imaging of complex, thick specimens.
Purpose of the Study:
- To develop and validate a novel reconstruction method for X-ray nanotomography that addresses diffraction and multiple scattering.
- To demonstrate the method's applicability to both full-field microscopy and ptychography techniques.
Main Methods:
- Modeling scattering and diffraction effects using multislice propagation.
- Employing iterative optimization to retrieve the 3D object function.
- Utilizing TensorFlow for optimization and automatic differentiation.
Main Results:
- The proposed method successfully models and corrects for multiple scattering and diffraction effects.
- The reconstruction technique is validated for both full-field microscopy and ptychography.
- The implementation showcases the flexibility and portability of deep learning tools in computational imaging.
Conclusions:
- The developed iterative reconstruction method offers a robust solution for imaging thick samples in X-ray nanotomography.
- This approach overcomes limitations of conventional algorithms, enabling more accurate 3D reconstructions.
- The use of deep learning frameworks like TensorFlow simplifies complex optimization problems in advanced imaging.
Related Concept Videos
Three-Dimensional Microscopy in Microbiology
Electron Microscope Tomography and Single-particle Reconstruction
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
Super-resolution Fluorescence Microscopy

