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Sequencing Small Non-coding RNA from Formalin-fixed Tissues and Serum-derived Exosomes from Castration-resistant Prostate Cancer Patients
Published on: November 19, 2019
Ribonucleotide reductase small subunit M2 is a master driver of aggressive prostate cancer
Ying Z Mazzu1, Joshua Armenia2, Subhiksha Nandakumar2
1Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Abstract:
Although there are molecularly distinct subtypes of prostate cancer, no molecular classification system is used clinically. The ribonucleotide reductase small subunit M2 (RRM2) gene plays an oncogenic role in many cancers. Our previous study elucidated comprehensive molecular mechanisms of RRM2 in prostate cancer (PC). Given the potent functions of RRM2, we set out to determine whether the RRM2 signature can be used to identify aggressive subtypes of PC. We applied gene ontology and pathway analysis in RNA-seq datasets from PC cells overexpressing RRM2. We refined the RRM2 signature by integrating it with two molecular classification systems (PCS and PAM50 subtypes) that define aggressive PC subtypes (PCS1 and luminal B) and correlated signatures with clinical outcomes in six published cohorts comprising 4000 cases of PC. Increased expression of genes in the RRM2 signature was significantly correlated with recurrence, high Gleason score, and lethality of PC. Patients with high RRM2 levels showed higher PCS1 score, suggesting the aggressive PC feature. Consistently, RRM2-regulated genes were highly enriched in the PCS1 signature from multiple PC cohorts. A simplified RRM2 signature (12 genes) was identified by intersecting the RRM2 signature, PCS1 signature, and the PAM50 classifier. Intriguingly, inhibition of RRM2 specifically targets PCS1 and luminal B genes. Furthermore, 11 genes in the RRM2 signature were correlated with enzalutamide resistance by using a single-cell RNA-seq dataset from PC circulating tumor cells. Finally, high expression of RRM2 was associated with an immunosuppressive tumor-immune microenvironment in both primary prostate cancer and metastatic prostate cancer using CIBERSORT analysis and LM22, a validated leukocyte gene signature matrix. These data demonstrate that RRM2 is a driver of aggressive prostate cancer subtypes and contributes to immune escape, suggesting that RRM2 inhibition may be of clinical benefit for patients with PC.
Insights
Ribonucleotide reductase small subunit M2 (RRM2) drives aggressive prostate cancer (PC) and immune escape. Targeting RRM2 may benefit patients with advanced PC, including those resistant to enzalutamide.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Prostate cancer (PC) exhibits molecularly distinct subtypes, yet lacks a clinical molecular classification system.
- The ribonucleotide reductase small subunit M2 (RRM2) gene is implicated as an oncogene in various cancers, including PC.
Purpose of the Study:
- To investigate whether a RRM2 gene signature can identify aggressive prostate cancer subtypes.
- To explore the association of RRM2 with clinical outcomes, treatment resistance, and the tumor immune microenvironment in PC.
Main Methods:
- Gene ontology and pathway analysis of RNA-seq data from PC cells overexpressing RRM2.
- Integration of RRM2 signature with PCS and PAM50 classification systems.
- Correlation analysis of RRM2 signature with clinical outcomes across six PC cohorts (4000 cases).
- Analysis of RRM2's role in enzalutamide resistance using single-cell RNA-seq data.
- Assessment of RRM2's impact on the tumor immune microenvironment via CIBERSORT and LM22 analysis.
Main Results:
- Increased RRM2 signature gene expression correlated significantly with PC recurrence, high Gleason score, and lethality.
- High RRM2 levels were associated with higher PCS1 scores, indicating aggressive PC features.
- A simplified 12-gene RRM2 signature was identified by intersecting RRM2, PCS1, and PAM50 signatures.
- RRM2 inhibition targeted PCS1 and luminal B genes; 11 RRM2 signature genes correlated with enzalutamide resistance.
- High RRM2 expression was linked to an immunosuppressive tumor-immune microenvironment in both primary and metastatic PC.
Conclusions:
- RRM2 acts as a driver of aggressive prostate cancer subtypes.
- RRM2 contributes to immune escape in prostate cancer.
- RRM2 inhibition presents a potential therapeutic strategy for patients with advanced or treatment-resistant prostate cancer.
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