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Updated: Dec 20, 2025

Semi-Quantitative Determination of Dopaminergic Neuron Density in the Substantia Nigra of Rodent Models using Automated Image Analysis
Published on: February 2, 2021
MRI-guided voxel-based automatic semi-quantification of dopamine transporter imaging
Jiri Trnka1, Petr Dusek2, Martin Samal3
1Department of Medical Physics, General University Hospital in Prague, U Nemocnice 2, 128 08 Prague, Czech Republic; Institute of Nuclear Medicine, First Faculty of Medicine, Charles University and General University Hospital in Prague, Salmovska 3, 120 00 Prague, Czech Republic.
This study introduces an automated method using MRI to correct partial-volume effects in 123I-FP-CIT SPECT imaging. The new technique enhances striatal quantification accuracy and reproducibility, reducing observer variability.
Area of Science:
- Nuclear Medicine
- Medical Imaging
- Neuroscience
Background:
- 123I-FP-CIT SPECT imaging is crucial for assessing neurodegenerative diseases.
- Poor spatial resolution leads to partial-volume effects, impacting quantitative accuracy.
- Manual region definition introduces user variability in semi-quantification.
Purpose of the Study:
- Develop an automated method for striatal volume of interest (VOI) definition and partial-volume correction (PVC).
- Utilize patient-specific MRI data for improved accuracy.
- Achieve complete contrast recovery in striatal regions.
Main Methods:
- Spatial pre-processing including image segmentation and multi-modality registration.
- Region-based voxel-wise partial-volume correction technique.
- Validation using an anthropomorphic striatal phantom and 58 patient datasets.
Main Results:
- Automated method achieves high linearity and complete contrast recovery (6.5 mm FWHM).
- Accuracy demonstrated by RMSE < 0.15; reproducibility < 5% for normal uptake ratios.
- Outperformed clinical assessment and showed strong correlation with BasGan software.
Conclusions:
- The automated method effectively corrects partial-volume effects in 123I-FP-CIT SPECT.
- Enhances accuracy and reproducibility of striatal uptake quantification.
- Reduces observer variability and is reproducible with publicly available software.

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