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Updated: Dec 12, 2025

ATAC-seq Assay with Low Mitochondrial DNA Contamination from Primary Human CD4+ T Lymphocytes
Published on: March 22, 2019
Purifying Selection against Pathogenic Mitochondrial DNA in Human T Cells
Melissa A Walker1, Caleb A Lareau1, Leif S Ludwig1
1From the Departments of Molecular Biology (M.A.W., V.K.M.), Neurology (M.A.W.), and Medicine (V.K.M) and the Genetics Unit, Department of Pediatrics (A.K.), Massachusetts General Hospital, Howard Hughes Medical Institute (M.A.W., A.R., V.K.M.), the Division of Hematology-Oncology, Boston Children's Hospital (C.A.L., L.S.L., V.G.S.), the Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Medical School (C.A.L., L.S.L., V.G.S.), the Department of Systems Biology, Harvard Medical School (V.K.M.), and Harvard Medical School (M.A.W., A.K.), Boston, and the Klarman Cell Observatory (L.S.L., A.R.), Broad Institute of MIT (Massachusetts Institute of Technology) and Harvard (M.A.W., C.A.L., V.G.S., V.K.M.), the Harvard Stem Cell Institute (V.G.S.), and the Department of Biology and Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology (A.R.), Cambridge - both in Massachusetts.
Mitochondrial DNA (mtDNA) mutations cause disease, with cells having mixed mutant and non-mutant mtDNA. T cells showed reduced mutant mtDNA, suggesting selection protects this cell type in mitochondrial diseases.
Area of Science:
- Genetics
- Cell Biology
- Biochemistry
Background:
- Mitochondrial diseases often stem from mutations in mitochondrial DNA (mtDNA).
- Cellular heteroplasmy, a mix of mutant and non-mutant mtDNA, is characteristic of these conditions.
- The proportion of mutant mtDNA varies significantly between patients and tissues.
Observation:
- Simultaneous single-cell heteroplasmy and cell state assays were performed on blood cells from patients with A3243G-associated mitochondrial encephalomyopathy, lactic acidosis, and strokelike episodes.
- A wide spectrum of heteroplasmy was observed across all blood cell types.
- T cells exhibited markedly reduced heteroplasmy compared to other cell types.
Findings:
- The reduced heteroplasmy in T cells suggests a selective pressure against mutant mtDNA within this lineage.
- This pattern of reduced heteroplasmy in T cells was consistent across multiple patients, including those with and without strokelike episodes.
- The study quantifies heteroplasmy levels at a single-cell resolution across diverse cell types.
Implications:
- Understanding cell-type-specific selection in mtDNA heteroplasmy can inform disease mechanisms.
- Identifying tissues with selective pressures may offer insights into disease progression and therapeutic strategies.
- This research provides a foundation for further investigation into the role of cellular state in mitochondrial disease pathogenesis.
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