Jove
Visualize
Contact Us

Related Concept Videos

Protein Networks02:26

Protein Networks

2.7K
2.7K
Protein Networks02:26

Protein Networks

4.4K
An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
4.4K
pV-Diagrams01:18

pV-Diagrams

5.8K
The pV diagram, which is a graph of pressure versus volume of the gas under study, is helpful in describing certain aspects of the substance. When the substance behaves like an ideal gas, the ideal gas equation describes the relationship between its pressure and volume. On a pV diagram, it is common to plot an isotherm, which is a curve showing p as a function of V with the number of molecules and the temperature fixed. Then, for an ideal gas, the product of the pressure of the gas and its...
5.8K
Neural Circuits01:25

Neural Circuits

2.4K
Neural circuits and neuronal pools are two of the main structures found in the nervous system. Neural circuits are networks of neurons that work together to carry out a specific task or process. They consist of interconnected neurons and glial cells, which provide structural and metabolic support.
Neuronal pools are collections of nerve cells with similar functions and interact through chemical and electrical signals. These pools include both interneurons (the central neural circuit nodes that...
2.4K
Synthetic Biology02:55

Synthetic Biology

5.3K
Synthetic biology is an interdisciplinary science that involves using principles from disciplines such as engineering, molecular biology, cell biology, and systems biology. It involves remodeling existing organisms from nature or constructing completely new synthetic organisms for applications such as protein or enzyme production, bioremediation, value-added macromolecule production, and the addition of desirable traits to crops, to name a few.
Golden rice
Golden rice is a genetically modified...
5.3K
Schemata01:17

Schemata

247
A schema is a mental construct that organizes related concepts, allowing the brain to process information efficiently. Upon activation, schemata facilitate assumptions about people or objects.
Two types of schemata are:
247

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Supervisory signals are intriguingly high in even simple features for predicting anticancer effect of antibody drug conjugates.

Briefings in bioinformatics·2026
Same author

Microbiome knowledge graph as a tool to understand bacteria-host associations.

Archives of microbiology·2025
Same author

Colon or semicolon: gut sampling microdevices for omics insights.

NPJ biofilms and microbiomes·2024
Same author

Role and significance of virus-bacteria interactions in disease progression.

Journal of applied microbiology·2024
Same author

EnsembleSeq: a workflow towards real-time, rapid, and simultaneous multi-kingdom-amplicon sequencing for holistic and resource-effective microbiome research at scale.

Microbiology spectrum·2024
Same author

BactInt: A domain driven transfer learning approach for extracting inter-bacterial associations from biomedical text.

Computational biology and chemistry·2024
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Video

Updated: Dec 11, 2025

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
10:44

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

Published on: December 7, 2021

2.5K

NetSets.js: a JavaScript framework for compositional assessment and comparison of biological networks through

Sunil Nagpal1, Bhusan K Kuntal1, Sharmila S Mande1

  • 1Bio-Sciences R&D Division, TCS Research, Tata Consultancy Services Ltd., Pune 411 013, India.

Bioinformatics (Oxford, England)
|August 18, 2020
PubMed
Summary

This study introduces NetSets.js, a JavaScript framework and web application for comparing biological network compositions. It enables integrated Venn and network diagram analysis for nodes and edges, facilitating visualization of common or exclusive interactions.

More Related Videos

Author Spotlight: Emerging Technologies and Advanced Tools for Decoding Metabolomics Data Analysis
07:11

Author Spotlight: Emerging Technologies and Advanced Tools for Decoding Metabolomics Data Analysis

Published on: November 10, 2023

3.1K
Neurovascular Network Explorer 2.0: A Simple Tool for Exploring and Sharing a Database of Optogenetically-evoked Vasomotion in Mouse Cortex In Vivo
08:32

Neurovascular Network Explorer 2.0: A Simple Tool for Exploring and Sharing a Database of Optogenetically-evoked Vasomotion in Mouse Cortex In Vivo

Published on: May 4, 2018

6.6K

Related Experiment Videos

Last Updated: Dec 11, 2025

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
10:44

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

Published on: December 7, 2021

2.5K
Author Spotlight: Emerging Technologies and Advanced Tools for Decoding Metabolomics Data Analysis
07:11

Author Spotlight: Emerging Technologies and Advanced Tools for Decoding Metabolomics Data Analysis

Published on: November 10, 2023

3.1K
Neurovascular Network Explorer 2.0: A Simple Tool for Exploring and Sharing a Database of Optogenetically-evoked Vasomotion in Mouse Cortex In Vivo
08:32

Neurovascular Network Explorer 2.0: A Simple Tool for Exploring and Sharing a Database of Optogenetically-evoked Vasomotion in Mouse Cortex In Vivo

Published on: May 4, 2018

6.6K

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Network Science

Background:

  • Venn diagrams and network diagrams are used to compare biological datasets like gene and protein lists.
  • Existing tools often require separate analyses for network nodes and edges, limiting compositional comparison.
  • Visualizing shared or exclusive network interactions across datasets necessitates specialized workflows.

Purpose of the Study:

  • To develop an integrated framework and web application for comparing biological network compositions.
  • To enable simultaneous analysis of nodes and edges using Venn and network diagrams.
  • To facilitate interactive visualization of common and exclusive network interactions.

Main Methods:

  • Introduction of NetSets.js, a server-independent JavaScript framework.
  • Development of a web application utilizing NetSets.js for compositional comparisons and network visualizations.
  • Integration with Cytoscape desktop application via Netsets-Cyapp.

Main Results:

  • NetSets.js integrates Venn and network diagrams into a single application.
  • The web application allows compositional comparisons of nodes and edges from edge-lists.
  • Interactive visualization of common/exclusive interactions and exportable network diagrams are provided.
  • Demonstrated utility with real-world biological networks (microbiome, gene interaction, multiplex, PPI).

Conclusions:

  • NetSets.js offers a unified approach for biological network comparison and visualization.
  • The tool simplifies the analysis of common and exclusive network elements.
  • Provides publication-ready network diagrams for small networks.