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Cell Specific Gene Expression01:58

Cell Specific Gene Expression

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Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...
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Reporter Genes02:11

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Reporter genes are a type of protein-coding gene that are often tagged to a gene of interest. Once inside a target cell, reporter genes usually produce visually identifiable characteristics like fluorescence and luminescence when expressed along with the gene of interest. Thus, reporter genes “report” the presence or absence of genes of interest in an organism, determine the gene expression pattern, or track the physical location of a DNA segment or protein in the cell.
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What is Gene Expression?01:42

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Overview
Gene expression is the process in which DNA directs the synthesis of functional products, that is, proteins. Cells can regulate gene expression at various stages. It allows organisms to generate different cell types and enables cells to adapt to internal and external factors.
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Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...
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Investigating Cell Signaling with Gene Expression Datasets.

James Wachira1, Cleo Hughes-Darden1, Asamoah Nkwanta2

  • 1Department of Biology, Morgan State University, 1700 E. Cold Spring Lane, Baltimore, MD 21251.

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Summary

This lesson introduces undergraduate students to analyzing large datasets in molecular biology. It enhances scientific communication and quantitative data analysis skills using cell signaling and gene expression examples.

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Area of Science:

  • Molecular Biology
  • Genomics
  • Bioinformatics

Background:

  • Modern molecular biology is data-intensive, lacking sufficient instructional resources for undergraduate data analysis.
  • Undergraduates require training in computational techniques for handling large biological datasets.

Purpose of the Study:

  • To introduce undergraduate students to essential skills for analyzing large datasets in molecular biology.
  • To enhance scientific communication and quantitative data analysis abilities in students.
  • To provide awareness of protocols for analyzing high-content quantitative molecular biology data.

Main Methods:

  • Active learning sessions integrating data analysis with scientific paper structure exercises.
  • Utilizing functional genomics databases and quantitative methods for biological data analysis.
  • Assessment through mini-reports and a final report evaluating understanding and application.

Main Results:

  • Students gain understanding of signal transduction's role in gene expression control.
  • Students improve scientific writing and data interpretation skills.
  • Students develop proficiency in analyzing and inferring from quantitative molecular biology data.

Conclusions:

  • The lesson effectively equips undergraduates with crucial skills for modern molecular biology research.
  • The curriculum bridges the gap in instructional resources for computational biology at the undergraduate level.
  • The modules are adaptable for various courses and can supplement laboratory experiments.