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Probing The Structure And Dynamics Of Nucleosomes Using Atomic Force Microscopy Imaging
Published on: January 31, 2019
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Near-atomic resolution structures of interdigitated nucleosome fibres
Zenita Adhireksan1,2, Deepti Sharma1,2, Phoi Leng Lee1,2
1School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore, 637551, Singapore.
Nature Communications
|September 22, 2020
Summary
Chromosome fibers form open zigzag structures, not folded helices, revealing atomic details of epigenetic regulation. Linker DNA length and histone binding influence this interdigitated arrangement, explaining chromatin
Area of Science:
- Molecular Biology
- Epigenetics
- Structural Biology
Background:
- Chromosome structure at the multi-nucleosomal level is crucial for epigenetic regulation and genome dynamics.
- Existing models of chromatin architecture lack atomic-level resolution for nucleosome fiber interactions.
Purpose of the Study:
- To elucidate the atomic-level structure of nucleosome fibers.
- To understand how nucleosome chain interactions contribute to higher-order chromosome organization.
Main Methods:
- Near-atomic resolution crystal structures were determined for nucleosome fibers.
- Fibers were assembled from cohesive-ended dinucleosomes, with and without linker histone.
Main Results:
- Nucleosome fibers adopt open zigzag conformations, not folded helical structures.
- These zigzag fibers interdigitate, with linker DNA length dictating fiber configuration and packing.
- Linker histone binding modulates fiber-fibre packing.
Conclusions:
- Nucleosome chains exhibit a predisposition for interdigitation under condensing conditions.
- The zigzag conformation explains local chromosome architecture and chromatin heterogeneity.
- This finding provides atomic insights into epigenetic regulation and genome dynamics.
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