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Updated: Nov 25, 2025

Single-Cell Resolution Three-Dimensional Imaging of Intact Organoids
Published on: June 5, 2020
Plant stem-cell organization and differentiation at single-cell resolution.
James W Satterlee1, Josh Strable1, Michael J Scanlon2
1School of Integrative Plant Science, Cornell University, Ithaca, NY 14853.
Maize shoot stem cells maintain genome integrity and divide slowly. Surprisingly, no canonical stem cell organizing center was found, but KNOTTED1 expression accelerated differentiation and leaf development.
Area of Science:
- Plant Biology
- Developmental Biology
- Genetics
Background:
- Plants possess pluripotent stem cells in shoot apical meristems (SAMs) crucial for organogenesis.
- Understanding stem cell behavior in the SAM is key to plant development.
Purpose of the Study:
- To characterize the transcriptional landscape of the maize shoot stem cell niche using single-cell RNA sequencing.
- To investigate stem cell function, differentiation, and the role of KNOTTED1 in maize shoot morphogenesis.
Main Methods:
- Single-cell RNA sequencing (scRNA-seq) for unbiased transcriptional profiling.
- Trajectory inference to analyze gene expression changes during cell differentiation.
Main Results:
- Maize SAM stem cells maintain genome integrity and exhibit low cell division rates.
- No evidence for a canonical stem cell organizing center was found.
- Ectopic KNOTTED1 expression accelerated cell differentiation and promoted leaf base development.
Conclusions:
- Single-cell transcriptomics provides insights into maize stem cell function and cell-fate acquisition.
- Findings offer a foundation for dissecting genetic control of plant shoot morphogenesis.
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