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Genome-wide Screen for miRNA Targets Using the MISSION Target ID Library
Published on: April 6, 2012
microRNA-31 regulates skeletogenesis by direct suppression of Eve and Wnt1
Nina Faye Sampilo1, Nadezda A Stepicheva2, Jia L Song1
1Department of Biological Sciences, University of Delaware, Newark, DE, 19716, USA.
Abstract:
microRNAs (miRNAs) play a critical role in a variety of biological processes, including embryogenesis and the physiological functions of cells. Evolutionarily conserved microRNA-31 (miR-31) has been found to be involved in cancer, bone formation, and lymphatic development. We previously discovered that, in the sea urchin, miR-31 knockdown (KD) embryos have shortened dorsoventral connecting rods, mispatterned skeletogenic primary mesenchyme cells (PMCs) and shifted and expanded Vegf3 expression domain. Vegf3 itself does not contain miR-31 binding sites; however, we identified its upstream regulators Eve and Wnt1 to be directly suppressed by miR-31. Removal of miR-31's suppression of Eve and Wnt1 resulted in skeletal and PMC patterning defects, similar to miR-31 KD phenotypes. Additionally, removal of miR-31's suppression of Eve and Wnt1 results in an expansion and anterior shift in expression of Veg1 ectodermal genes, including Vegf3 in the blastulae. This indicates that miR-31 indirectly regulates Vegf3 expression through directly suppressing Eve and Wnt1. Furthermore, removing miR-31 suppression of Eve is sufficient to cause skeletogenic defects, revealing a novel regulatory role of Eve in skeletogenesis and PMC patterning. Overall, this study provides a proposed molecular mechanism of miR-31's regulation of skeletogenesis and PMC patterning through its cross-regulation of a Wnt signaling ligand and a transcription factor of the endodermal and ectodermal gene regulatory network.
Insights
MicroRNAs (miRNAs) regulate sea urchin development by controlling skeletogenesis. MicroRNA-31 (miR-31) indirectly impacts Vegf3 expression by suppressing Eve and Wnt1, crucial for patterning primary mesenchyme cells.
Area of Science:
- Developmental Biology
- Molecular Biology
- Genetics
Background:
- MicroRNAs (miRNAs) are key regulators of cellular processes and development.
- MicroRNA-31 (miR-31), an evolutionarily conserved miRNA, influences cancer, bone formation, and lymphatic development.
- Previous studies showed miR-31 knockdown in sea urchin embryos causes defects in skeletal elements and cell patterning.
Purpose of the Study:
- To elucidate the molecular mechanism by which miR-31 regulates skeletogenesis and primary mesenchyme cell (PMC) patterning in sea urchin embryos.
- To investigate the indirect regulation of Vegf3 expression by miR-31 through its targets Eve and Wnt1.
- To identify novel roles of Eve in skeletogenesis and PMC patterning.
Main Methods:
- MicroRNA knockdown (KD) experiments in sea urchin embryos.
- Analysis of gene expression patterns, including Vegf3, Eve, and Wnt1.
- Investigating the regulatory relationships between miR-31, Eve, Wnt1, and Vegf3.
Main Results:
- miR-31 KD embryos exhibit shortened connecting rods and mispatterned PMCs.
- miR-31 directly suppresses the expression of transcription factors Eve and Wnt1.
- Suppression of Eve and Wnt1 by miR-31 indirectly regulates Vegf3 expression, leading to developmental defects.
- Removal of miR-31's suppression of Eve alone is sufficient to cause skeletogenic defects.
Conclusions:
- miR-31 indirectly regulates Vegf3 expression by directly suppressing Eve and Wnt1.
- Eve plays a novel and critical role in sea urchin skeletogenesis and PMC patterning.
- This study reveals a molecular mechanism for miR-31-mediated regulation of skeletogenesis via cross-regulation of Wnt signaling and transcription factors.
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