Related Experiment Video
Updated: Nov 17, 2025

10:57
Scanning Electron Microscopy SEM Protocols for Problematic Plant, Oomycete, and Fungal Samples
Published on: February 3, 2017
29.7K
Methanol fixation for scanning electron microscopy of plants
Ki Woo Kim1,2
1School of Ecology and Environmental System, Kyungpook National University, Sangju, 37224, Republic of Korea. kiwoo@knu.ac.kr.
Applied Microscopy
|February 13, 2021
Summary
Methanol fixation offers a rapid, safe alternative for preparing plant specimens for scanning electron microscopy (SEM). This method preserves tissue morphology comparable to traditional toxic chemical fixatives, simplifying SEM sample preparation.
Area of Science:
- Plant science
- Microscopy
- Biotechnology
Background:
- Standard protocols for scanning electron microscopy (SEM) of plant specimens often involve toxic chemical fixatives like glutaraldehyde, paraformaldehyde, and osmium tetroxide.
- These conventional methods pose safety and disposal challenges.
- A need exists for safer, simpler, and faster alternatives in plant sample preparation for SEM.
Purpose of the Study:
- To evaluate methanol fixation as a rapid and safe alternative to conventional chemical fixatives for plant SEM.
- To assess the effectiveness of methanol fixation and ethanol dehydration in preserving plant tissue morphology and dimensions for SEM analysis.
Main Methods:
- Plant specimens were subjected to methanol fixation for 30 seconds or longer.
- Critical-point drying was employed after methanol fixation.
- A modified protocol involved methanol fixation followed by ethanol dehydration.
Main Results:
- Methanol fixation, when combined with critical-point drying, yielded preservation quality comparable to traditional chemical fixatives.
- The modified protocol using methanol fixation and ethanol dehydration effectively preserved plant tissue morphology and dimensions.
- Solvent-based protocols demonstrated simplicity and speed compared to standard fixation methods.
Conclusions:
- Methanol fixation presents a rapid, simple, and effective alternative for preparing plant specimens for scanning electron microscopy.
- This solvent-based approach offers a safer and more accessible method for SEM sample preparation in plant science.
- The findings support the adoption of methanol fixation and ethanol dehydration as viable alternatives to hazardous chemical fixatives.

