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Identifying and Validating MYC:Protein Interactors in Pursuit of Novel Anti-MYC Therapies
Diana Resetca1, Alannah S MacDonald1, Tristan M G Kenney1,2
1Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada.
Abstract:
By identifying MYC protein-protein interactors, we aim to gain a deeper mechanistic understanding of MYC as a regulator of gene transcription and potent oncoprotein. This information can then be used to devise strategies for disrupting critical MYC protein-protein interactions to inhibit MYC-driven tumorigenesis. In this chapter, we discuss four techniques to identify and validate MYC-interacting partners. First, we highlight BioID, a powerful discovery method used to identify high-confidence proximal interactors in living cells. We also discuss bioinformatic prioritization strategies for the BioID-derived MYC-proximal complexes. Next, we discuss how protein interactions can be validated using techniques such as in vivo-in vitro pull-down assays and the proximity ligation assay (PLA). We conclude with an overview of biolayer interferometry (BLI), a quantitative method used to characterize direct interactions between two proteins in vitro. Overall, we highlight the principles of each assay and provide methodology necessary to conduct these experiments and adapt them to the study of interactors of additional proteins of interest.
Insights
Identifying MYC protein interactions advances understanding of gene transcription and cancer. This research details methods like BioID, pull-down assays, proximity ligation assay (PLA), and biolayer interferometry (BLI) to find and validate MYC partners, aiding cancer therapy development.
Area of Science:
- Molecular Biology
- Oncology
- Biochemistry
Background:
- The MYC oncoprotein is a critical regulator of gene transcription and a driver of tumorigenesis.
- Understanding MYC's protein-protein interactions is essential for elucidating its oncogenic mechanisms.
- Targeting MYC interactions offers a potential therapeutic strategy for MYC-driven cancers.
Purpose of the Study:
- To detail methodologies for identifying and validating MYC protein-protein interactors.
- To provide a framework for understanding MYC's role in gene regulation and cancer.
- To enable the development of strategies that disrupt MYC interactions for cancer therapy.
Main Methods:
- BioID: Proximity-dependent biotinylation for identifying proximal interactors in living cells.
- Bioinformatic prioritization: Strategies for analyzing BioID-derived MYC-proximal complexes.
- Validation techniques: In vivo-in vitro pull-down assays and proximity ligation assay (PLA).
- Quantitative analysis: Biolayer interferometry (BLI) for characterizing direct protein interactions in vitro.
Main Results:
- The chapter outlines four distinct techniques for MYC interactor discovery and validation.
- Methodologies cover both in vivo proximity labeling and in vitro interaction characterization.
- The presented methods are adaptable for studying interactors of other proteins of interest.
Conclusions:
- Comprehensive identification and validation of MYC interactors are crucial for understanding its function.
- The discussed techniques provide a robust toolkit for interrogating MYC's molecular network.
- Disrupting key MYC interactions holds promise for inhibiting MYC-driven tumorigenesis.
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