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Published on: August 4, 2019
Inhibition of YTHDF2 triggers proteotoxic cell death in MYC-driven breast cancer
Jaclyn M Einstein1, Mark Perelis1, Isaac A Chaim1
1Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA; Stem Cell Program, University of California, San Diego, La Jolla, CA, USA; Institute for Genomic Medicine, University of California, San Diego, La Jolla, CA, USA.
Abstract:
RNA-binding proteins (RBPs) are critical regulators of post-transcriptional gene expression, and aberrant RBP-RNA interactions can promote cancer progression. Here, we interrogate the function of RBPs in cancer using pooled CRISPR-Cas9 screening and identify 57 RBP candidates with distinct roles in supporting MYC-driven oncogenic pathways. We find that disrupting YTHDF2-dependent mRNA degradation triggers apoptosis in triple-negative breast cancer (TNBC) cells and tumors. eCLIP and m6A sequencing reveal that YTHDF2 interacts with mRNAs encoding proteins in the MAPK pathway that, when stabilized, induce epithelial-to-mesenchymal transition and increase global translation rates. scRibo-STAMP profiling of translating mRNAs reveals unique alterations in the translatome of single cells within YTHDF2-depleted solid tumors, which selectively contribute to endoplasmic reticulum stress-induced apoptosis in TNBC cells. Thus, our work highlights the therapeutic potential of RBPs by uncovering a critical role for YTHDF2 in counteracting the global increase of mRNA synthesis in MYC-driven breast cancers.
Insights
Researchers identified RNA-binding proteins (RBPs) that regulate MYC-driven cancers. Disrupting YTHDF2 protein function triggers cancer cell death, offering a potential therapeutic strategy for triple-negative breast cancer (TNBC).
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- RNA-binding proteins (RBPs) control gene expression after transcription.
- Dysregulated RBP-RNA interactions are implicated in cancer development.
- MYC-driven pathways are crucial in several cancer types.
Purpose of the Study:
- To investigate the role of RBPs in cancer, particularly in MYC-driven oncogenesis.
- To identify specific RBPs that could be targeted for cancer therapy.
- To explore the function of YTHDF2 in triple-negative breast cancer (TNBC).
Main Methods:
- Pooled CRISPR-Cas9 screening to identify functional RBPs in cancer.
- eCLIP and m6A sequencing to map RBP-RNA interactions.
- scRibo-STAMP profiling to analyze the translatome in single cells.
Main Results:
- Identified 57 RBP candidates involved in MYC-driven pathways.
- Disruption of YTHDF2 induced apoptosis in TNBC cells and tumors.
- YTHDF2 targets mRNAs in the MAPK pathway, influencing epithelial-to-mesenchymal transition and translation.
- YTHDF2 depletion caused specific translatome alterations linked to endoplasmic reticulum stress-induced apoptosis in TNBC.
Conclusions:
- YTHDF2 plays a critical role in counteracting increased mRNA synthesis in MYC-driven breast cancers.
- Targeting YTHDF2 represents a potential therapeutic strategy for TNBC.
- RBPs are promising targets for cancer treatment by modulating gene expression regulation.
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