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Updated: Oct 20, 2025

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Transcription-associated DNA breaks and cancer: A matter of DNA topology
Agnese Cristini1, Mathéa Géraud1, Olivier Sordet1
1Cancer Research Center of Toulouse, INSERM, Université de Toulouse, Université Toulouse III Paul Sabatier, CNRS, Toulouse, France.
Abstract:
Transcription is an essential cellular process but also a major threat to genome integrity. Transcription-associated DNA breaks are particularly detrimental as their defective repair can induce gene mutations and oncogenic chromosomal translocations, which are hallmarks of cancer. The past few years have revealed that transcriptional breaks mainly originate from DNA topological problems generated by the transcribing RNA polymerases. Defective removal of transcription-induced DNA torsional stress impacts on transcription itself and promotes secondary DNA structures, such as R-loops, which can induce DNA breaks and genome instability. Paradoxically, as they relax DNA during transcription, topoisomerase enzymes introduce DNA breaks that can also endanger genome integrity. Stabilization of topoisomerases on chromatin by various anticancer drugs or by DNA alterations, can interfere with transcription machinery and cause permanent DNA breaks and R-loops. Here, we review the role of transcription in mediating DNA breaks, and discuss how deregulation of topoisomerase activity can impact on transcription and DNA break formation, and its connection with cancer.
Insights
Transcription can cause DNA breaks, threatening genome integrity and leading to cancer. Deregulated topoisomerase activity exacerbates this, promoting DNA breaks and R-loops, which are linked to cancer development.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Biology
Background:
- Transcription is vital but poses risks to genome integrity.
- Transcription-associated DNA breaks can lead to mutations and cancer.
- These breaks often stem from topological stress during transcription.
Purpose of the Study:
- To review the role of transcription in DNA break formation.
- To discuss how topoisomerase deregulation impacts transcription and DNA breaks.
- To explore the connection between these processes and cancer.
Main Methods:
- Literature review of transcription-associated DNA damage.
- Analysis of topoisomerase function and its role in genome instability.
- Examination of R-loop formation and its contribution to DNA breaks.
Main Results:
- Transcription-associated DNA breaks arise from topological problems.
- Impaired removal of torsional stress promotes R-loops and DNA breaks.
- Topoisomerases, while relaxing DNA, can introduce breaks; their stabilization is oncogenic.
Conclusions:
- Transcription is a source of DNA breaks, impacting genome stability.
- Topoisomerase activity deregulation is linked to increased DNA breaks, R-loops, and cancer.
- Understanding these mechanisms is crucial for cancer research and therapy.
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