Structure of Machupo virus polymerase in complex with matrix protein Z

Jun Ma1, Shuangyue Zhang1,2, Xinzheng Zhang3,4,5

  • 1National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, China.

Nature Communications
|October 26, 2021
PubMed

Insights

Machupo virus L protein structure reveals how the Z protein inhibits viral replication. This finding offers a new strategy for developing antiviral drugs against dangerous hemorrhagic fevers.

Area of Science:

  • Virology
  • Structural Biology
  • Drug Discovery

Background:

  • Arenaviridae viruses cause severe hemorrhagic fevers with high mortality.
  • No effective countermeasures are currently available.
  • The arenavirus L protein is crucial for viral transcription and replication, making it a key drug target.

Purpose of the Study:

  • To determine the structure of the Machupo virus L protein in complex with the Z protein.
  • To elucidate the mechanism by which the Z protein inhibits L protein activity.

Main Methods:

  • Cryo-electron microscopy was used to determine the structure.
  • Structural analysis of the L-Z protein complex.

Main Results:

  • The Z protein binds the L protein with 1:1 stoichiometry.
  • Z protein binding occurs at a critical interface between L protein domains.
  • This interaction likely stabilizes L protein domains, inhibiting its catalytic activity.

Conclusions:

  • The structure provides insight into the inhibitory mechanism of arenavirus replication.
  • This provides a novel structural basis for developing arenavirus antiviral drugs.

Related Concept Videos

Protein Complex Assembly02:41

Protein Complex Assembly

Proteins can form homomeric complexes with another unit of the same protein or heteromeric complexes with different types.  Most protein complexes self-assemble spontaneously via ordered pathways, while some proteins need assembly factors that guide their proper assembly. Despite the crowded intracellular environment, proteins usually interact with their correct partners and form functional complexes.
Many viruses self-assemble into a fully functional unit using the infected host cell to...
13.2K
Leaky Scanning02:28

Leaky Scanning

During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.3K
The Replisome03:01

The Replisome

DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with...
36.0K
Viral Structure00:56

Viral Structure

Viruses are extraordinarily diverse in shape and size, but they all have several structural features in common. All viruses have a core that contains a DNA- or RNA-based genome. The core is surrounded by a protective coat of proteins called the capsid. The capsid is composed of subunits called capsomeres. The capsid and genome-containing core are together known as the nucleocapsid.
67.0K
RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
9.9K
Eukaryotic RNA Polymerases00:58

Eukaryotic RNA Polymerases

RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
25.0K