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Updated: Oct 9, 2025

Identification of RNAs Engaged in Direct RNA-RNA Interaction with a Long Non-Coding RNA
Published on: July 9, 2021
Understanding lncRNA-protein assemblies with imaging and single-molecule approaches
Jiaquan Liu1, Liang-Zhong Yang1, Ling-Ling Chen2
1State Key Laboratory of Molecular Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 320 Yueyang Road, Shanghai, 200031, China.
This review covers methods for studying long non-coding RNA (lncRNA)-protein interactions, from bulk cell analysis to real-time single-cell imaging. These techniques help understand how lncRNA-protein complexes assemble and function.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Long non-coding RNAs (lncRNAs) form complexes with RNA-binding proteins (RBPs).
- These lncRNA-protein complexes are crucial for diverse cellular functions.
- Understanding their assembly and regulation is vital for comprehending cellular mechanisms.
Purpose of the Study:
- To review molecular methods for identifying lncRNA-protein interactions.
- To highlight advanced imaging and single-molecule techniques for real-time visualization.
- To discuss the applications and limitations of these cutting-edge approaches.
Main Methods:
- Large-scale methods for bulk cell analysis.
- Individual-level interaction identification techniques.
- Advanced imaging and single-molecule approaches for single-cell visualization.
Main Results:
- Various molecular methods exist for studying lncRNA-protein interactions.
- New imaging and single-molecule techniques allow real-time observation in single cells.
- These advanced methods enable quantification and detailed analysis of RNA-protein dynamics.
Conclusions:
- Studying lncRNA-protein interactions is essential for understanding biological processes.
- Single-cell and real-time imaging methods offer powerful new insights.
- Despite limitations, these approaches significantly advance the field of RNA-protein complex research.
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