Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

pV-Diagrams01:18

pV-Diagrams

4.6K
The pV diagram, which is a graph of pressure versus volume of the gas under study, is helpful in describing certain aspects of the substance. When the substance behaves like an ideal gas, the ideal gas equation describes the relationship between its pressure and volume. On a pV diagram, it is common to plot an isotherm, which is a curve showing p as a function of V with the number of molecules and the temperature fixed. Then, for an ideal gas, the product of the pressure of the gas and its...
4.6K
Stem Cell Therapy for Tissue Regeneration01:21

Stem Cell Therapy for Tissue Regeneration

4.2K
Stem cell therapy is a method used in regenerative medicine to repair and restore function to damaged tissues and organs. Stem cells have the potential to proliferate and differentiate into various tissue types, making them ideal candidates for tissue regeneration. For example, hematopoietic stem cell transplants are commonly used in blood cancer treatment to replenish damaged bone marrow and restore healthy blood cells.
Types of Stem Cells used in Stem Cell Therapy
The two main cell...
4.2K
Stem Cell Culture01:17

Stem Cell Culture

5.6K
Stem cell research aims to find ways to use stem cells to regenerate and repair cellular damage. Over time, most adult cells undergo the wear and tear of aging and lose their ability to divide and repair themselves. Stem cells do not display a particular morphology or function. Adult stem cells, which exist as a small subset of cells in most tissues, keep dividing and can differentiate into a number of specialized cells generally formed by that tissue. These cells enable the body to renew and...
5.6K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

ScriptManager: a platform for scalable and reproducible high-resolution analysis of genomics datasets.

bioRxiv : the preprint server for biology·2026
Same author

Reimagining plant science training in the era of generative artificial intelligence: a global perspective.

The Plant cell·2026
Same author

A unified framework for causal gene regulatory network inference grounded in orthogonal molecular evidence.

bioRxiv : the preprint server for biology·2026
Same author

Protein structure prediction and design for high-throughput computing.

bioRxiv : the preprint server for biology·2025
Same author

High-Resolution Genome-Wide Maps Reveal Widespread Presence of Torsional Insulation.

bioRxiv : the preprint server for biology·2024
Same author

GenoPipe: identifying the genotype of origin within (epi)genomic datasets.

Nucleic acids research·2023

Related Experiment Video

Updated: Oct 4, 2025

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
10:44

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

Published on: December 7, 2021

2.3K

STENCIL: A web templating engine for visualizing and sharing life science datasets.

Qi Sun1, Ali Nematbakhsh1, Prashant K Kuntala2

  • 1Cornell Institute of Biotechnology, Cornell University, Ithaca, New York, United States of America.

Plos Computational Biology
|February 9, 2022
PubMed
Summary
This summary is machine-generated.

STENCIL is a web templating engine that organizes, visualizes, and shares interactive data visualizations. This tool simplifies experimental data analysis and dissemination for life sciences research, enhancing reproducibility.

More Related Videos

A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

17.9K
Databases to Efficiently Manage Medium Sized, Low Velocity, Multidimensional Data in Tissue Engineering
09:43

Databases to Efficiently Manage Medium Sized, Low Velocity, Multidimensional Data in Tissue Engineering

Published on: November 22, 2019

6.4K

Related Experiment Videos

Last Updated: Oct 4, 2025

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
10:44

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

Published on: December 7, 2021

2.3K
A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

17.9K
Databases to Efficiently Manage Medium Sized, Low Velocity, Multidimensional Data in Tissue Engineering
09:43

Databases to Efficiently Manage Medium Sized, Low Velocity, Multidimensional Data in Tissue Engineering

Published on: November 22, 2019

6.4K

Area of Science:

  • Life Sciences
  • Bioinformatics
  • Computational Biology

Background:

  • Consolidating diverse life science data analyses is challenging.
  • Reproducibility and data dissemination require interpretable experimental results.
  • Current methods struggle with the variety of biological data types.

Purpose of the Study:

  • Introduce STENCIL, a web templating engine for data visualization.
  • To provide a flexible tool for organizing, visualizing, and sharing experimental data.
  • To facilitate the creation of high-quality, editable figures linked to source data.

Main Methods:

  • STENCIL utilizes a flexible web framework for customizable visual front ends.
  • It supports programmatic data access via REST API for easy sharing.
  • The tool streams data from the Galaxy bioinformatics platform.

Main Results:

  • STENCIL enables rendering of various experimental outcomes into interactive visualizations.
  • It produces downloadable and editable figures that maintain data integrity.
  • The system successfully supported two large-scale genomic projects with over 2,400 datasets.

Conclusions:

  • STENCIL offers a lightweight solution for experimental data aggregation and visualization.
  • It enhances data sharing and reproducibility in life sciences.
  • The tool is publicly available on GitHub for broader adoption.