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Deep Learning-Based Segmentation of Cryo-Electron Tomograms
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Applications of deep learning in electron microscopy.

Kevin P Treder1, Chen Huang2, Judy S Kim1,2

  • 1Department of Materials, University of Oxford, Oxford, Oxfordshire OX1 3PH, UK.

Microscopy (Oxford, England)
|March 11, 2022
PubMed
Summary

Machine learning is increasingly used in electron microscopy (EM) to process large datasets from fast detectors. This review covers network architectures and applications for EM challenges like denoising and inpainting.

Keywords:
artificial intelligencecryo-EMdeep learningelectron microscopymachine learningneural networks

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Area of Science:

  • Materials Science
  • Biophysics
  • Chemistry

Background:

  • Electron microscopy (EM) generates massive datasets due to advanced detectors.
  • Manual data processing is becoming infeasible for these large datasets.
  • Machine learning (ML) offers automated solutions for EM data analysis.

Purpose of the Study:

  • To review the expanding application of ML in electron microscopy.
  • To summarize ML network architectures and error metrics used in EM.
  • To highlight adaptations of ML for specific EM challenges in physical and life sciences.

Main Methods:

  • Review of existing literature on ML applications in EM.
  • Categorization of ML network architectures (e.g., convolutional neural networks).
  • Analysis of error metrics relevant to EM data processing tasks.

Main Results:

  • Identified key ML techniques applied to EM problems such as denoising and inpainting.
  • Detailed the modifications made to conventional ML networks and training data for EM.
  • Showcased successful ML implementations across physical and life science domains.

Conclusions:

  • ML is crucial for handling the scale of modern EM data.
  • Tailored ML approaches are effective for specific EM data processing tasks.
  • The integration of ML is advancing research in both physical and life sciences using EM.