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Published on: August 30, 2013
Detection of subtle white matter lesions in MRI through texture feature extraction and boundary delineation using an
Kokhaur Ong1,2, David M Young2,3, Sarina Sulaiman4
1Bioinformatics Institute, A*STAR, Singapore, Singapore.
Abstract:
White matter lesions (WML) underlie multiple brain disorders, and automatic WML segmentation is crucial to evaluate the natural disease course and effectiveness of clinical interventions, including drug discovery. Although recent research has achieved tremendous progress in WML segmentation, accurate detection of subtle WML present early in the disease course remains particularly challenging. Here we propose an approach to automatic WML segmentation of mild WML loads using an intensity standardisation technique, gray level co-occurrence matrix (GLCM) embedded clustering technique, and random forest (RF) classifier to extract texture features and identify morphology specific to true WML. We precisely define their boundaries through a local outlier factor (LOF) algorithm that identifies edge pixels by local density deviation relative to its neighbors. The automated approach was validated on 32 human subjects, demonstrating strong agreement and correlation (excluding one outlier) with manual delineation by a neuroradiologist through Intra-Class Correlation (ICC = 0.881, 95% CI 0.769, 0.941) and Pearson correlation (r = 0.895, p-value < 0.001), respectively, and outperforming three leading algorithms (Trimmed Mean Outlier Detection, Lesion Prediction Algorithm, and SALEM-LS) in five of the six established key metrics defined in the MICCAI Grand Challenge. By facilitating more accurate segmentation of subtle WML, this approach may enable earlier diagnosis and intervention.
Insights
This study presents an automated method for segmenting subtle white matter lesions (WML) in the brain. The approach accurately identifies early-stage WML, aiding in earlier diagnosis and treatment of neurological disorders.
Area of Science:
- Neuroimaging
- Medical image analysis
- Computational neuroscience
Background:
- White matter lesions (WML) are indicative of various brain disorders.
- Accurate segmentation of WML is vital for tracking disease progression and evaluating treatment efficacy.
- Detecting subtle, early-stage WML remains a significant challenge in automated segmentation.
Purpose of the Study:
- To develop and validate an automated approach for segmenting mild white matter lesion loads.
- To improve the accuracy of detecting subtle WML, particularly in early disease stages.
Main Methods:
- Utilized an intensity standardization technique.
- Employed a Gray Level Co-occurrence Matrix (GLCM) embedded clustering technique for feature extraction.
- Integrated a Random Forest (RF) classifier for morphology identification.
- Applied a Local Outlier Factor (LOF) algorithm to precisely define lesion boundaries by identifying edge pixels based on local density deviations.
Main Results:
- The automated approach demonstrated strong agreement and correlation with manual segmentation by a neuroradiologist (ICC = 0.881, Pearson r = 0.895).
- The method outperformed three leading algorithms in five out of six key metrics from the MICCAI Grand Challenge.
- Validation on 32 human subjects confirmed the robustness and accuracy of the WML segmentation.
Conclusions:
- The proposed automated WML segmentation method effectively identifies subtle lesions.
- This technique facilitates more accurate segmentation, potentially enabling earlier diagnosis and intervention for brain disorders.
- The approach shows promise for improving the evaluation of disease course and therapeutic interventions in clinical drug discovery.
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