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Characterizing chemical signaling between engineered "microbial sentinels" in porous microplates
Christopher A Vaiana1,2, Hyungseok Kim1, Jonathan Cottet1
1Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.
Molecular Systems Biology
|March 22, 2022
Summary
Researchers developed a porous microplate for living materials, enabling molecular diffusion and signaling. This work quantifies transport parameters, aiding the design of engineered cells for applications like pathogen remediation.
Area of Science:
- Biomaterials Engineering
- Synthetic Biology
- Chemical Engineering
Background:
- Living materials integrate engineered cells with material scaffolds for advanced functions.
- Designing these materials is challenging due to limited understanding of intracellular signaling transport.
- Porous scaffolds are crucial for cell communication and function within living materials.
Purpose of the Study:
- To develop and characterize a porous microplate system for studying molecular transport in living materials.
- To quantify the diffusion and adsorption parameters of various signaling molecules within hydrogel barriers.
- To enable the design of living materials with predictable cellular communication.
Main Methods:
- Development of a porous microplate with hydrogel barriers (60% porosity, 1.6 tortuosity).
- Characterization of molecular diffusion (dyes, antibiotics, inducers, quorum signals) between microplate wells.
- Construction of a sentinel Escherichia coli strain with sensors for multiple inducers and quorum signals.
- Quantification of signaling distances and response times using finite element modeling.
Main Results:
- Molecular diffusion of various signaling molecules was successfully characterized across hydrogel barriers.
- The engineered sentinel strain responded to inducers diffusing up to 14 mm.
- Adsorption coefficients for signaling molecules in hydrogels were determined, ranging from 0 to 0.1 mol m⁻³.
- Signaling distances were found to be influenced by hydrogel adsorption properties.
Conclusions:
- The developed porous microplate system effectively facilitates and quantifies molecular transport for living materials.
- Derived transport parameters and adsorption coefficients are crucial for designing predictable living material systems.
- This research provides foundational data for advancing applications in pathogen remediation, computation, and biofilm engineering.

