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Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Mediterranean-Like Dietary Pattern Associations With Gut Microbiome Composition and Subclinical Gastrointestinal
Williams Turpin1, Mei Dong2, Gila Sasson1
1Zane Cohen Centre for Digestive Diseases, Mount Sinai Hospital, Toronto, Ontario, Canada.
A Mediterranean-like diet is linked to a healthier gut microbiome and reduced intestinal inflammation in healthy relatives of Crohn's disease patients. This suggests dietary patterns can influence gut health and potentially prevent disease.
Area of Science:
- Gastroenterology
- Microbiome Research
- Nutritional Science
Background:
- Crohn's disease (CD) patients exhibit altered gut microbial composition compared to healthy individuals.
- Epidemiological studies suggest diet significantly contributes to CD risk by modulating gut bacteria and inflammation.
- The precise relationship between long-term dietary patterns, gut microbiome, and subclinical inflammation remains to be fully elucidated.
Purpose of the Study:
- To identify distinct dietary patterns within a cohort of healthy first-degree relatives (FDRs) of CD patients.
- To investigate the association between these identified dietary patterns and specific gut microbial compositions.
- To assess the relationship between dietary patterns, gut microbiome, and subclinical gut inflammation markers.
Main Methods:
- Recruited 2289 healthy FDRs of CD patients for the Genetic, Environmental, Microbial (GEM) Project.
- Collected stool samples and utilized validated food frequency questionnaires to assess habitual diet over the preceding year.
- Employed unsupervised analysis to identify distinct dietary clusters (DCs) and microbial composition clusters.
Main Results:
- A Mediterranean-like dietary pattern (DC3) was strongly associated with a specific microbial composition, including increased fiber-degrading bacteria (e.g., Ruminococcus) and Faecalibacterium.
- The DC3 dietary pattern showed a significant association with lower levels of subclinical gut inflammation, as measured by fecal calprotectin.
- Mediation analysis revealed that the Mediterranean-like diet had a direct effect on reducing inflammation, partially mediated by the gut microbiota.
Conclusions:
- Mediterranean-like dietary patterns are associated with a favorable gut microbiome composition and reduced intestinal inflammation.
- Long-term dietary patterns, rather than individual foods, appear to influence subclinical gut inflammation.
- Findings support the development of targeted dietary strategies to modulate the microbiome and reduce gut inflammation for disease prevention.
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