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Updated: Sep 4, 2025

A Quantitative Fitness Analysis Workflow
Published on: August 13, 2012
A Q-Q plot aids interpretation of the false discovery rate
1Research Statistics Group, GlaxoSmithKline Medicines Research Centre, Stevenage, Hertfordshire, UK.
Abstract:
False discovery rates are routinely controlled by application of the Benjamini-Hochberg step-up procedure to a set of p-values. A method is demonstrated for representing the values so obtained (the BH-FDRs) on a quantile-quantile (Q-Q) plot of the p-values transformed to the negative-logarithmic scale. Recognition of this connection between the BH-FDR and the Q-Q plot facilitates both understanding of the meaning of the BH-FDR and interpretation of the BH-FDR in a particular data set.
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