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Updated: Sep 3, 2025

Breath Collection from Children for Disease Biomarker Discovery
Published on: February 14, 2019
Non-invasive diagnostics of pathogenic bacteria using a breath sampler in children with cystic fibrosis
Koen J van Aerde1,2,3, Aniek Leegstraten2, Corné H van den Kieboom2,4
1Pediatric Infectious Diseases and Immunology, Amalia Children's Hospital, Radboud University Medical Center, Nijmegen, The Netherlands.
Insights
The modular breath sampler (MBS) shows promise for detecting bacteria in cystic fibrosis (CF) patients, potentially offering higher sensitivity than traditional methods and improving patient experience.
Area of Science:
- Respiratory Medicine
- Microbiology
- Medical Device Technology
Background:
- Cystic fibrosis (CF) is an autosomal recessive disease characterized by thick mucus, leading to recurrent pulmonary infections.
- Current diagnostics for bacterial colonization in CF patients rely on cultures from swabs, sputum, or bronchoalveolar lavage.
- These conventional methods may not fully capture the lower respiratory tract's microbial landscape.
Purpose of the Study:
- To evaluate the efficacy of a novel Modular Breath Sampler (MBS) for detecting respiratory pathogens in CF patients.
- To compare pathogen detection rates between MBS samples and conventional diagnostic methods.
- To assess patient and parent perception of the MBS device.
Main Methods:
- A cross-sectional study involving CF patients and a control group of asthma patients.
- Collection of exhaled breath samples using the MBS device.
- Pathogen-specific polymerase chain reactions (PCRs) on MBS samples and comparison with conventional cultures from swabs/sputa.
Main Results:
- The MBS detected *Pseudomonas aeruginosa* and *Streptococcus pneumoniae* more frequently than conventional methods.
- *Staphylococcus aureus* was more prevalent in swab/sputa samples.
- MBS-based diagnostics suggested higher sensitivity, with most *P. aeruginosa* detections not correlating with recent positive cultures.
- Patients and parents found the MBS easy to use and less burdensome.
Conclusions:
- The MBS may offer a more sensitive approach to detecting lower respiratory tract pathogens in CF patients.
- The device samples different respiratory compartments compared to traditional methods.
- The MBS is perceived as a user-friendly and less burdensome diagnostic tool for CF care.
Abstract:
Cystic fibrosis (CF) is a common autosomal recessive disease causing thick, viscous secretions leading to pulmonary infections with pathogenic bacteria. As part of routine patient care, colonization and infection with these bacteria is monitored with cough swab or sputum cultures and sometimes bronchoalveolar lavage. In this cross-sectional proof-of-concept study in a cohort of CF patients we collected swabs or sputa and exhaled breath samples with the modular breath sampler (MBS), a newly developed two-way non-rebreathing sampling device. Pathogen specific polymerase chain reactions (PCRs) were performed on the MBS samples and compared with the results obtained with conventional diagnostics (i.e. culturing of swabs and sputa). A control group of stable asthma patients was used as negative control for the MBS measurements. The pathogens detected using MBS and conventional culturing differed:S. aureuswas found more often in swab or sputum samples whereasPseudomonas aeruginosaandS. pneumoniaewere found more often in MBS samples. We hypothesize that this is due to sampling of different compartments, MBS samples are derived from the lower respiratory tract while cultures from cough swabs and sputa are dominated by pathogens residing in the upper respiratory tract. Another important difference is the readout, i.e. culture versus PCR. The majority of CF patients in whomP. aeruginosawas found did not have recent positive cultures suggesting higher sensitivity of MBS-based than conventional diagnostics. The majority of parents/patients found the MBS easy to use and less of a burden than respiratory sampling.
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