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'biogeom': An R package for simulating and fitting natural shapes
Peijian Shi1, Johan Gielis2, Brady K Quinn3
1Co-Innovation Centre for Sustainable Forestry in Southern China, Bamboo Research Institute, College of Biology and the Environment, Nanjing Forestry University, Nanjing, China.
A new R package, biogeom, offers a universal tool for simulating and fitting natural shapes like eggs, leaves, and starfish. It provides novel equations and datasets for analyzing shape and growth, with ecological and evolutionary implications.
Area of Science:
- * Biology
- * Ecology
- * Evolutionary Biology
- * Botany
- * Zoology
Background:
- * Many natural objects display radial or axial symmetry.
- * A universal tool for simulating and fitting these natural shapes is currently lacking.
- * Understanding natural shapes is crucial for ecological and evolutionary studies.
Purpose of the Study:
- * To introduce the 'biogeom' R package, a novel tool for simulating and fitting natural shapes.
- * To provide universal parametric equations for generating diverse natural object profiles.
- * To offer tools for analyzing shape similarity and ontogenetic modifications.
Main Methods:
- * Development of universal parametric equations for shape generation.
- * Integration of empirical datasets (e.g., bird eggs, leaves, seeds, starfish).
- * Implementation of growth-rate equations and sigmoid curves for growth trajectory modeling.
Main Results:
- * 'biogeom' successfully simulates and fits shapes of various natural objects.
- * The package includes datasets for direct application and broader use.
- * Novel equations enable modeling of growth curves and predicting maximum growth rates.
- * Quantitative analysis of shape similarity and ontogenetic changes is possible.
Conclusions:
- * 'biogeom' provides a versatile solution for shape analysis in natural sciences.
- * The package facilitates quantitative insights into growth, form, and evolution.
- * It has significant implications for ecological and evolutionary research on living organisms.
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