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Updated: Sep 1, 2025

Study of Protein-protein Interactions in Autophagy Research
Published on: September 9, 2017
Proximity labeling of endogenous RICTOR identifies mTOR complex 2 regulation by ADP ribosylation factor ARF1
Amelia K Luciano1, Ekaterina D Korobkina1, Scott P Lyons2
1Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester, Massachusetts, USA.
Abstract:
Mechanistic target of rapamycin (mTOR) complex 2 (mTORC2) regulates metabolism, cell proliferation, and cell survival. mTORC2 activity is stimulated by growth factors, and it phosphorylates the hydrophobic motif site of the AGC kinases AKT, SGK, and PKC. However, the proteins that interact with mTORC2 to control its activity and localization remain poorly defined. To identify mTORC2-interacting proteins in living cells, we tagged endogenous RICTOR, an essential mTORC2 subunit, with the modified BirA biotin ligase BioID2 and performed live-cell proximity labeling. We identified 215 RICTOR-proximal proteins, including proteins with known mTORC2 pathway interactions, and 135 proteins (63%) not previously linked to mTORC2 signaling, including nuclear and cytoplasmic proteins. Our imaging and cell fractionation experiments suggest nearly 30% of RICTOR is in the nucleus, hinting at potential nuclear functions. We also identified 29 interactors containing RICTOR-dependent, insulin-stimulated phosphorylation sites, thus providing insight into mTORC2-dependent insulin signaling dynamics. Finally, we identify the endogenous ADP ribosylation factor 1 (ARF1) GTPase as an mTORC2-interacting protein. Through gain-of-function and loss-of-function studies, we provide functional evidence that ARF1 may negatively regulate mTORC2. In summary, we present a new method of studying endogenous mTORC2, a resource of RICTOR/mTORC2 protein interactions in living cells, and a potential mechanism of mTORC2 regulation by the ARF1 GTPase.
Insights
Mechanistic target of rapamycin complex 2 (mTORC2) controls cell growth and survival. This study identified novel mTORC2 interacting proteins, including ARF1, revealing new insights into mTORC2 regulation and function.
Area of Science:
- Cellular Biology
- Molecular Biology
- Biochemistry
Background:
- Mechanistic target of rapamycin complex 2 (mTORC2) is a crucial regulator of cell metabolism, proliferation, and survival.
- mTORC2 activity is stimulated by growth factors and phosphorylates key AGC kinases like AKT, SGK, and PKC.
- The proteins interacting with mTORC2 to modulate its activity and localization are not well understood.
Purpose of the Study:
- To identify novel proteins interacting with endogenous mTORC2 in living cells.
- To investigate the potential nuclear localization and function of mTORC2.
- To elucidate the role of ADP ribosylation factor 1 (ARF1) in mTORC2 regulation.
Main Methods:
- Utilized BioID2 proximity labeling of endogenous RICTOR, an essential mTORC2 subunit, in live cells.
- Performed mass spectrometry to identify RICTOR-proximal proteins.
- Conducted imaging, cell fractionation, and gain/loss-of-function studies for ARF1.
Main Results:
- Identified 215 RICTOR-proximal proteins, with 135 (63%) not previously linked to mTORC2 signaling.
- Revealed approximately 30% of RICTOR resides in the nucleus, suggesting potential nuclear functions.
- Identified ARF1 as an mTORC2-interacting protein and provided evidence for its negative regulatory role.
Conclusions:
- Presented a novel method for studying endogenous mTORC2 and a comprehensive resource of its interactors.
- Discovered potential nuclear roles for mTORC2 and identified ARF1 as a novel regulator of mTORC2 activity.
- The findings offer new insights into the complex regulation and dynamics of mTORC2 signaling, particularly in response to insulin stimulation.
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