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Updated: Aug 27, 2025

Oncogenic Gene Fusion Detection Using Anchored Multiplex Polymerase Chain Reaction Followed by Next Generation Sequencing
Published on: July 5, 2019
[A Case of Advanced Lung Squamous Cell Carcinoma with CLIP1-ALK Fusion Gene]
Yue Yuan1,2, Zheng Wang3, Xin Nie1
1Department of Oncology, Beijing Hospital; National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Science, Beijing 100730, China.
Abstract:
Anaplastic lymphoma kinase (ALK) fusion gene is an important tumor driver gene of non-small cell lung cancer, accounting for about 5% of patients with non-small cell lung cancer, of which 97% are patients with lung adenocarcinoma. Since the first discovery of echinoderm microtubule associated protein-like 4 (EML4)-ALK fusion in patients with lung adenocarcinoma in 2007, a variety of ALK fusion partners have been detected. CLIP1-ALK fusion gene was detected by next generation sequencing (NGS) in this patient with advanced lung squamous cell carcinoma, and Alectinib and Ensartinib were taken orally on May 5, 2021. Aletinib was effective for this patient but the patients died on September 30, 2021. This is a report of lung squamous cell carcinoma patients with CLIP1-ALK fusion gene treated with ALK inhibitors. .
Insights
This study reports a rare case of advanced lung squamous cell carcinoma with a CLIP1-ALK fusion gene. Treatment with ALK inhibitors showed initial effectiveness, but the patient ultimately succumbed to the disease.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- Anaplastic lymphoma kinase (ALK) gene fusions are key drivers in a subset of non-small cell lung cancer (NSCLC), primarily lung adenocarcinoma.
- While EML4-ALK is the most common fusion, diverse ALK fusion partners have been identified.
- ALK fusion genes are less frequently observed in lung squamous cell carcinoma (LSCC).
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