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Updated: Aug 27, 2025

Deep Proteome Profiling by Isobaric Labeling, Extensive Liquid Chromatography, Mass Spectrometry, and Software-assisted Quantification
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Deep Proteome Profiling by Isobaric Labeling, Extensive Liquid Chromatography, Mass Spectrometry, and Software-assisted Quantification

Published on: November 15, 2017

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compareMS2 2.0: An Improved Software for Comparing Tandem Mass Spectrometry Datasets.

Rob Marissen1, Madhushri S Varunjikar2, Jeroen F J Laros3,4

  • 1Center for Proteomics and Metabolomics, Leiden University Medical Center, Postbus 9600, 2300 RC Leiden, The Netherlands.

Journal of Proteome Research
|September 29, 2022
PubMed
Summary

Biological species identification using mass spectrometry data is enhanced with updated compareMS2 software. This tool now features a new metric and graphical interface for improved proteomics analysis and applications in food and feed characterization.

Keywords:
compareMS2distance metricmolecular phylogeneticsquality controltandem mass spectrometry

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