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Updated: Aug 26, 2025

Quantitative PCR-based Assay to Measure Sonic Hedgehog Signaling in Cellular Model of Ciliogenesis
Published on: January 31, 2025
KIF3B promotes a PI3K signaling gradient causing changes in a Shh protein gradient and suppressing polydactyly in
Shuo Wang1, Yosuke Tanaka1, Ying Xu1
1Department of Cell Biology and Anatomy, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
Sonic hedgehog (Shh) gradient formation in limb development is explained by a new diffusion-and-trapping model. This mechanism involves Shh particle sorting based on PI3K signaling, influencing digit determination.
Area of Science:
- Developmental Biology
- Molecular Biology
- Genetics
Background:
- Digit determination in limb buds relies on a Sonic hedgehog (Shh) protein gradient.
- The precise mechanism governing Shh gradient formation remains largely unknown.
- KIF3B motor protein plays a role in limb development, as suggested by preaxial polydactyly phenotypes in hypomorphic mice.
Purpose of the Study:
- To elucidate the mechanism of Sonic hedgehog (Shh) gradient formation during limb bud development.
- To investigate the role of KIF3B, fibroblast growth factor (FGF), and phosphatidylinositol 3-kinase (PI3K) signaling in Shh gradient regulation.
- To propose a diffusion-and-trapping hypothesis for Shh gradient formation.
Main Methods:
- Analysis of limb buds from KIF3B motor hypomorphic mice exhibiting preaxial polydactyly.
- Experimentation involving the transplantation of fibroblast growth factor 8b (FGF8b)-soaked beads to mimic developmental phenotypes.
- Subcellular investigation of KIF3B transport of Talpid3 and its effect on PI3K signaling.
- Differential sorting analysis of endocytosed Shh based on PI3K signaling strength.
Main Results:
- Disorganization of distal-to-proximal FGF and PI3K signaling gradients, and posterior-to-anterior Shh gradients in KIF3B hypomorphic mouse limb buds.
- Successful reproduction of the observed phenotype by FGF8b bead transplantation.
- KIF3B-mediated transport of Talpid3 to regulate PI3K signaling.
- Differential sorting of Shh into exosome-like particles (high PI3K) or cytonemal punctata (low PI3K).
Conclusions:
- Shh gradient formation is regulated by a diffusion-and-trapping mechanism.
- PI3K signaling strength dictates the sorting of Shh-containing particles.
- Shh particles undergo peripheral diffusion or central cytonemal trapping, establishing the spatial gradient essential for limb development.
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