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Severe testing with high-dimensional omics data for enhancing biomedical scientific discovery.
1Predictive Society and Data Analytics Lab, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Finland. frank.emmert-streib@tuni.fi.
NPJ Systems Biology and Applications
|October 21, 2022
Summary
High-throughput omics studies face a reproducibility crisis, hindering translational research. This paper introduces a severe testing framework (STF) to improve scientific discovery by addressing emergence, hypothesis clarity, and study design in omics research.
Area of Science:
- Biomedical Sciences
- Translational Research
- Genomics
Background:
- High-throughput omics experiments generate vast data for biomedical research.
- Limited translation of omics findings into clinical practice persists.
- The reproducibility crisis impedes scientific progress in omics.
Purpose of the Study:
- To address the challenges hindering translational research in omics.
- To propose a framework for enhancing scientific discovery in biomedical sciences.
- To tackle the reproducibility crisis in high-throughput omics studies.
Main Methods:
- Revisiting problems in scientific discovery, specifically the reproducibility crisis.
- Analyzing three key issues: embracing emergence, clarifying omics hypotheses, and study design.
- Defining a severe testing framework (STF) for omics studies.
Main Results:
- Identified a threefold problem hindering translational research progress.
- Proposed the severe testing framework (STF) as a solution.
- STF offers systematic means to refine omics studies for better discovery.
Conclusions:
- Addressing emergence, hypothesis clarity, and study design is crucial for omics research.
- The severe testing framework (STF) can enhance scientific discovery.
- Improving omics study design is key to advancing translational medicine.
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