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Open Source High Content Analysis Utilizing Automated Fluorescence Lifetime Imaging Microscopy
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Fluorescence lifetime: Beating the IRF and interpulse window.

Mohamadreza Fazel1, Alexander Vallmitjana2, Lorenzo Scipioni2

  • 1Center for Biological Physics, Arizona State University, Tempe, Arizona; Department of Physics, Arizona State University, Tempe, Arizona.

Biophysical Journal
|January 20, 2023
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Summary
This summary is machine-generated.

This study introduces Bayesian nonparametrics (BNP) lifetime analysis to accurately interpret complex fluorescence lifetime imaging data. The method effectively analyzes unknown mixtures with diverse lifetimes, even with limited photon counts.

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Area of Science:

  • Biophysics
  • Chemical Physics
  • Microscopy

Background:

  • Fluorescence lifetime imaging (FLIM) is crucial for mapping chemical species in cells.
  • Quantitative analysis of FLIM data is challenging due to complex biological environments and overlapping lifetimes.
  • Existing methods struggle with mixtures of species exhibiting very similar or extreme lifetimes (short/long).

Purpose of the Study:

  • To develop a novel method for analyzing fluorescence lifetime data from complex biological samples.
  • To broaden the applicability of fluorescence lifetime analysis beyond intermediate, well-separated lifetimes.
  • To enable accurate lifetime determination for unknown mixtures of arbitrary lifetimes.

Main Methods:

  • Application of Bayesian nonparametrics (BNP) to analyze fluorescence lifetime data from single confocal spots.
  • Development of a new algorithm, termed BNP lifetime analysis, for simultaneous treatment of unknown lifetime mixtures.
  • Benchmarking the algorithm using synthetic and experimental fluorescence lifetime imaging data.

Main Results:

  • The BNP lifetime analysis method successfully handles unknown mixtures of arbitrary lifetimes, including those outside the typical 'Goldilocks zone'.
  • The algorithm demonstrates robustness, accurately distinguishing and deducing lifetimes even with as few as 500 photon counts.
  • Successful validation across a range of synthetic and experimental datasets.

Conclusions:

  • Bayesian nonparametrics provides a powerful framework for advancing quantitative fluorescence lifetime imaging analysis.
  • The developed BNP lifetime analysis method significantly expands the capabilities for interpreting complex FLIM data in cellular environments.
  • This approach offers a more versatile and sensitive tool for researchers studying cellular chemistry and dynamics.