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Related Concept Videos

Computed Tomography01:10

Computed Tomography

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Tomography refers to imaging by sections. Computed tomography (CT) is a non-invasive imaging technique that uses computers to analyze several cross-sectional X-rays to reveal minute details about structures in the body.
The technique was invented in the 1970s and is based on the principle that as X-rays pass through the body, they are absorbed or reflected at different levels. In the technique, a patient lies on a motorized platform while a computerized axial tomography (CAT) scanner rotates...
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Imaging Studies III: Computed Tomography01:27

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DefinitionComputed Tomography (CT) of the genitourinary (GU) tract is a non-invasive imaging modality that utilizes X-rays and computer processing to generate detailed cross-sectional images of the urinary system, encompassing the kidneys, ureters, bladder, and adjacent structures such as the adrenal glands.PurposeCT scans of the GU tract serve several diagnostic and therapeutic purposes, including:Diagnosis of Urinary Tract Diseases: Detects kidney stones, tumors, cysts, and congenital...
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Imaging Biological Samples with Optical Microscopy01:18

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Optical microscopy uses optic principles to provide detailed images of samples. Antonie van Leeuwenhoek designed the first compound optical microscope in the 17th century to visualize blood cells, bacteria, and yeast cells. In 1830, Joseph Jackson Lister created an essentially modern light microscope. The 20th century saw the development of microscopes with enhanced magnification and resolution.
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Positron Emission Tomography01:29

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Positron emission tomography (PET) is a medical imaging technique involving radiopharmaceuticals — substances that emit short-lived radiation. Although the first PET scanner was introduced in 1961, it took 15 more years before radiopharmaceuticals were combined with the technique and revolutionized its potential.
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Electron Microscope Tomography and Single-particle Reconstruction01:07

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Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
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Total internal reflection fluorescence microscopy or TIRF is an advanced microscopic technique used to visualize fluorophores in samples close to a solid surface with a higher refractive index, such as a glass coverslip. TIRF only allows fluorophores in proximity to the solid surface to be excited. When light from a medium with a lower refractive index (such as air) hits the glass coverslip at a critical angle, the light undergoes total internal reflection stead of passing through the glass.
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Deep Learning-Based Segmentation of Cryo-Electron Tomograms
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Unrolled-DOT: an interpretable deep network for diffuse optical tomography.

Yongyi Zhao1, Ankit Raghuram1, Fay Wang2

  • 1Rice University, Department of Electrical and Computer Engineering, Houston, Texas, United States.

Journal of Biomedical Optics
|March 13, 2023
PubMed
Summary
This summary is machine-generated.

A new deep learning model, Unrolled-DOT, significantly improves time-of-flight diffuse optical tomography (ToF-DOT) for biomedical imaging. It offers over 10x faster reconstruction and reduced error compared to traditional methods.

Keywords:
machine learningoptical tomographytime-of-flight imaging

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Area of Science:

  • Biomedical imaging
  • Optical tomography
  • Medical physics

Background:

  • Imaging through scattering media is crucial for applications like breast tumor detection and functional neuroimaging.
  • Time-of-flight diffuse optical tomography (ToF-DOT) offers high-resolution imaging but relies on computationally intensive reconstruction algorithms.
  • Traditional algorithms can suffer from long runtimes and lower reconstruction quality due to model mismatch or improper tuning.

Purpose of the Study:

  • To develop a faster and more accurate inverse solver for ToF-DOT using a data-driven approach.
  • To improve image reconstruction quality by addressing model mismatch in ToF-DOT.

Main Methods:

  • Developed 'Unrolled-DOT', a data-driven unrolled network utilizing the learned iterative shrinkage thresholding algorithm.
  • Incorporated a refinement U-Net and Visual Geometry Group (VGG) perceptual loss to enhance reconstruction quality.
  • Trained and tested the model on simulated and real-world data, benchmarking against physics-based and learning-based solvers.

Main Results:

  • Unrolled-DOT achieved state-of-the-art performance on real-world data.
  • Demonstrated over a 10x reduction in both runtime and mean-squared error compared to traditional physics-based solvers.
  • Outperformed existing learning-based algorithms in speed and reconstruction accuracy.

Conclusions:

  • Introduced a novel learning-based inverse solver for ToF-DOT, 'Unrolled-DOT'.
  • Achieved significant improvements in both speed and reconstruction quality.
  • This advancement holds promise for noninvasive biomedical imaging applications.