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Updated: Aug 4, 2025

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors
Published on: May 9, 2025
Fragment Hopping-Based Design of Novel Biphenyl-DAPY Derivatives as Potent Non-Nucleoside Reverse Transcriptase
Ya-Li Sang1,2,3, Christophe Pannecouque4, Erik De Clercq4
1Engineering Center of Catalysis and Synthesis for Chiral Molecules, Department of Chemistry, Fudan University, Shanghai 200433, China.
Researchers developed novel biphenyl-DAPY compounds to improve non-nucleoside reverse transcriptase inhibitor (NNRTI) efficacy against HIV-1. The lead compound 8r shows exceptional potency and safety, offering a promising new avenue for HIV treatment.
Area of Science:
- Medicinal Chemistry
- Virology
- Pharmacology
Background:
- Non-nucleoside reverse transcriptase inhibitors (NNRTIs) are crucial in HIV treatment.
- Drug resistance necessitates the development of novel NNRTIs with enhanced efficacy.
- Previous NNRTI 4 showed promise but required further optimization.
Purpose of the Study:
- To design and synthesize novel biphenyl-DAPY derivatives to overcome NNRTI resistance.
- To evaluate the anti-HIV-1 potency and safety profiles of the new compounds.
- To identify lead candidates with improved therapeutic potential.
Main Methods:
- Fragment-hopping strategy employed for novel compound design.
- Synthesis of biphenyl-DAPY derivatives (compounds 8a-v).
- In vitro evaluation of anti-HIV-1 activity against wild-type and mutant strains, cytotoxicity, and pharmacokinetic properties.
Main Results:
- Most synthesized compounds (8a-v) demonstrated significantly improved anti-HIV-1 potency compared to NNRTI 4.
- Compound 8r exhibited exceptional potency against wild-type HIV-1 (EC50 = 2.3 nM) and resistant mutants (e.g., K103N, E138K).
- Compound 8r displayed reduced cytotoxicity and a higher selectivity index than etravirine and rilpivirine, with favorable pharmacokinetics and low toxicity.
Conclusions:
- Novel biphenyl-DAPY analogues represent a promising class of NNRTIs.
- Compound 8r demonstrates high potency, safety, and oral bioavailability, suggesting its potential for HIV therapy.
- These findings support the development of biphenyl-DAPY analogues as next-generation anti-HIV drugs.
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