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Updated: Aug 3, 2025

A Pipeline to Investigate the Structures and Signaling Pathways of Sphingosine 1-Phosphate Receptors
Published on: June 8, 2022
Transmembrane protein CD69 acts as an S1PR1 agonist
Hongwen Chen1, Yu Qin1, Marissa Chou2
1Department of Molecular Genetics, The University of Texas Southwestern Medical Center, Dallas, United States.
Cluster of Differentiation 69 (CD69) acts as a protein agonist for Sphingosine-1-phosphate receptor 1 (S1PR1), initiating its internalization and inhibiting lymphocyte egress. This reveals a novel mechanism for regulating immune cell trafficking.
Area of Science:
- Immunology
- Structural Biology
- Biochemistry
Background:
- Sphingosine-1-phosphate receptor 1 (S1PR1) activation is crucial for lymphocyte egress, immune surveillance, and T cell activity.
- CD69 is an endogenous regulator that inhibits lymphocyte egress by interacting with S1PR1, but the mechanism was unclear.
- It was unknown if transmembrane proteins could act as agonists for class A GPCRs.
Purpose of the Study:
- To elucidate the structural mechanism by which CD69 regulates S1PR1.
- To determine if CD69 functions as a protein agonist for S1PR1.
- To understand the role of CD69-S1PR1 interaction in G-protein signaling and receptor internalization.
Main Methods:
- Cryo-electron microscopy (cryo-EM) to determine the structure of CD69-bound S1PR1 complexed with a Gi protein.
- Site-directed mutagenesis to investigate key residues at the CD69-S1PR1 interface.
- Functional assays to assess receptor internalization and signaling.
Main Results:
- The cryo-EM structure revealed that the transmembrane helix of CD69 directly contacts S1PR1, inducing allosteric changes for Gi activation.
- Mutations at the interface disrupted CD69-S1PR1 interactions and reduced receptor internalization.
- CD69 was demonstrated to act as a *cis*-acting protein agonist of S1PR1.
Conclusions:
- CD69 functions as a *cis*-acting protein agonist for S1PR1, directly activating it.
- This interaction promotes Gi-dependent S1PR1 internalization, impairing S1P gradient sensing.
- The findings reveal a novel mechanism for inhibiting lymphocyte egress and have implications for autoimmune disease therapies.
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