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Updated: Jul 29, 2025

Measurements of CO2 Fluxes at Non-Ideal Eddy Covariance Sites
Published on: June 24, 2019
Differences between tree stem CO2 efflux and O2 influx rates cannot be explained by internal CO2 transport or storage
Juliane Helm1,2, Roberto L Salomón3,4, Boaz Hilman1
1Department of Biogeochemical Processes, Max-Planck-Institute for Biogeochemistry, Jena, Germany.
Tree stem respiration measurements show inconsistencies between methods. Further research is needed to understand carbon dioxide (CO2) movement within tree stems and its impact on forest carbon balance.
Area of Science:
- Forest ecology
- Plant physiology
- Biogeochemistry
Background:
- Tree stem respiration (Rs) is crucial for forest carbon budgets.
- Discrepancies exist between mass balance and oxygen-based methods for measuring Rs.
- The fate of respired CO2 within tree stems remains unclear, impacting carbon dynamics.
Purpose of the Study:
- Investigate the reasons for inconsistent Rs measurements between different approaches.
- Clarify the internal CO2 fluxes and their role in reconciling measurement discrepancies.
- Assess the potential role of phosphoenolpyruvate carboxylase (PEPC) in local CO2 removal.
Main Methods:
- Collected data on CO2 efflux, O2 influx, xylem CO2, sap flow, sap pH, stem temperature, and nonstructural carbohydrates in beech trees.
- Analyzed the ratio of CO2 efflux to O2 influx along a vertical gradient.
- Measured potential PEPC capacity in tree stems.
Main Results:
- The ratio of CO2 efflux to O2 influx was consistently below 1 (0.7) across a 3-m stem gradient.
- Internal CO2 fluxes did not account for the difference between influx and efflux.
- No significant changes in respiratory substrate use were detected.
- PEPC capacity was similar to that found in young twigs.
Conclusions:
- The study could not reconcile the discrepancies between the mass balance and oxygen-based methods for measuring tree stem respiration.
- Results suggest that internal CO2 fluxes do not fully explain the observed differences.
- High PEPC capacity indicates a potential role in local CO2 removal within tree stems, warranting further investigation.
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