Related Experiment Video
Updated: Jul 25, 2025

05:37
Single-Molecule Fluorescence Visualization of DNA Polymerase Dynamics at G-Quadruplexes
Published on: April 4, 2025
764
Phase Separation Modulates the Formation and Stabilities of DNA Guanine Quadruplex
Zi Gao1, Jun Yuan2, Xiaomei He1
1Department of Chemistry, University of California Riverside, Riverside, California, 92521-0403, United States.
JACS Au
|June 30, 2023
Summary
DNA G-quadruplexes (G4s) can undergo phase separation. Disrupting this process destabilizes G4 structures in human cells, revealing phase separation as a key factor in G4 formation and stability.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- G-rich DNA sequences form G-quadruplex (G4) structures, crucial for genome stability and DNA metabolic processes.
- G4 structures are dynamic and influenced by proteins, but other factors affecting their formation and stability in cells are unclear.
Purpose of the Study:
- To investigate the role of phase separation in the formation and stability of G-quadruplex structures in human cells.
Main Methods:
- In vitro phase separation assays for DNA G4s.
- Immunofluorescence microscopy and ChIP-seq using a G4-specific antibody (BG4).
Main Results:
- DNA G4s were observed to undergo phase separation in vitro.
- Disruption of phase separation led to global destabilization of G4 structures in cells.
Conclusions:
- Phase separation is identified as a novel determinant influencing G-quadruplex formation and stability within human cells.
Related Concept Videos
Restarting Stalled Replication Forks
5.8K
DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart,...
5.8K
Single-Strand DNA Binding Proteins
14.4K
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
14.4K
Maxam-Gilbert Sequencing
11.3K
In the same year as the discovery of the Sanger sequencing method, another group of scientists, Allan Maxam and Walter Gilbert, demonstrated their chemical-cleavage method for DNA sequencing. The Maxam-Gilbert method relies on using different chemicals that can cleave the DNA sequence at specific sites, the separation of resulting DNA fragments of variable size using electrophoresis, and deciphering the DNA sequence from the resulting gel bands.
Challenges of the Maxam-Gilbert Method
The...
Challenges of the Maxam-Gilbert Method
The...
11.3K
Separation of Sister Chromatids
3.7K
At the transition from prophase to metaphase, there is a reduction in cohesion along the chromosomal arms, resulting in the resolution of sister chromatids. However, residual cohesin connections remain to hold the sister chromatids together until the transition from metaphase to anaphase. The residual connection prevents any premature separation of sister chromatids, blocking the risks of aneuploidy within the daughter cells.
At the onset of anaphase, separase, a proteolytic enzyme, is...
At the onset of anaphase, separase, a proteolytic enzyme, is...
3.7K
¹H NMR: Complex Splitting
1.3K
A proton M that is coupled to a proton X results in doublet signals for M. However, NMR-active nuclei can be simultaneously coupled to more than one nonequivalent nucleus. When M is coupled to a second proton A, such as in styrene oxide, each peak in the doublet is split into another doublet.
Splitting diagrams or splitting tree diagrams are routinely used to depict such complex couplings. While drawing splitting diagrams, the splitting with the larger coupling constant is usually applied...
Splitting diagrams or splitting tree diagrams are routinely used to depict such complex couplings. While drawing splitting diagrams, the splitting with the larger coupling constant is usually applied...
1.3K
DNA Topoisomerases
31.5K
Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
31.5K

