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The UCSC Genome Browser database: 2024 update
Brian J Raney1, Galt P Barber1, Anna Benet-Pagès2,3
1Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
Nucleic Acids Research
|November 12, 2023
Summary
The UCSC Genome Browser enhances genomic data access with new human pangenome and viral genome information. These updates expand its utility for researchers worldwide.
Area of Science:
- Genomics
- Bioinformatics
- Computational Biology
Background:
- The UCSC Genome Browser is a widely used web tool for genomic visualization and analysis.
- It provides access to annotation data for numerous genome assemblies.
Purpose of the Study:
- To report recent updates and new features of the UCSC Genome Browser.
- To highlight expanded data offerings and improved genomic representation.
Main Methods:
- Integration of new data from the Human Pangenome Reference Consortium.
- Inclusion of viral genomes, including SARS-CoV-2.
- Expansion of the GenArk genome system with 1,200 new genomes.
- Addition of nine new user-contributed track hubs.
- Release of 29 new human genome tracks and 11 new mouse genome tracks.
Main Results:
- Increased diversity in genomic representation through new genome additions.
- Enhanced support for user-generated data via public track hubs.
- Broader and deeper genomic knowledge shared with a global user base.
- Expanded data on human pangenomes and viral genomes.
Conclusions:
- The UCSC Genome Browser continues to evolve as a comprehensive resource for genomic research.
- Recent updates significantly enhance the breadth and depth of available genomic data.
- These improvements support a growing global community of users in genomic analysis.
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