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Published on: August 8, 2022
Compound Heterozygosity for Late-Onset Cardiomyopathy-Causative ALPK3 Coding Variant and Novel Intronic Variant Cause
Tomer Poleg1, Marina Eskin-Schwartz1,2, Regina Proskorovski-Ohayon1
1The Morris Kahn Laboratory of Human Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel.
Insights
Genetic variants in alpha-protein kinase 3 (ALPK3) cause infantile and adult-onset hypertrophic cardiomyopathy (HCM) and dilated cardiomyopathy (DCM), expanding the understanding of these heart conditions.
Area of Science:
- Genetics
- Cardiology
- Molecular Biology
Background:
- Hypertrophic cardiomyopathy (HCM) and dilated cardiomyopathy (DCM) are significant causes of pediatric cardiovascular disease.
- The pseudokinase alpha-protein kinase 3 (ALPK3) is crucial for sarcomere organization and cardiomyocyte development.
- ALPK3 mutations are linked to both inherited pediatric and adult-onset cardiomyopathies.
Purpose of the Study:
- To investigate novel variants in the ALPK3 gene.
- To elucidate the genotypic spectrum and phenotypic variability of ALPK3-related cardiomyopathies.
- To validate the role of ALPK3 in both recessive and dominant forms of heart disease.
Main Methods:
- Genetic sequencing to identify ALPK3 variants.
- Analysis of patient phenotypes, including cardiac abnormalities, facial dysmorphism, and skeletal features.
- Correlation of genotype with clinical presentation and inheritance patterns.
Main Results:
- Two novel ALPK3 variants were identified: a coding variant and an intronic splicing variant.
- Compound heterozygosity for both variants was associated with infantile-onset HCM and Noonan-like features.
- Heterozygosity for the coding variant presented as adult-onset HCM, demonstrating partial penetrance.
Conclusions:
- The study expands the known genetic causes of ALPK3-related cardiomyopathies.
- Partial penetrance of heterozygous ALPK3 loss-of-function mutations contributes to late-onset hypertrophic cardiomyopathy.
- ALPK3 variants are implicated in a spectrum of inherited cardiac conditions with variable clinical presentations.
Abstract:
Hypertrophic and dilated cardiomyopathy (HCM, DCM) are leading causes of cardiovascular morbidity and mortality in children. The pseudokinase alpha-protein kinase 3 (ALPK3) plays an essential role in sarcomere organization and cardiomyocyte differentiation. ALPK3 coding mutations are causative of recessively inherited pediatric-onset DCM and HCM with variable expression of facial dysmorphism and skeletal abnormalities and implicated in dominantly inherited adult-onset cardiomyopathy. We now report two variants in ALPK3-a coding variant and a novel intronic variant affecting splicing. We demonstrate that compound heterozygosity for both variants is highly suggestive to be causative of infantile-onset HCM with webbed neck, and heterozygosity for the coding variant presents with adult-onset HCM. Our data validate partial penetrance of heterozygous loss-of-function ALPK3 mutations in late-onset hypertrophic cardiomyopathy and expand the genotypic spectrum of autosomal recessive ALPK3-related cardiac disease with Noonan-like features.
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