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Updated: Jul 7, 2025

Single-cell RNA Sequencing and Analysis of Human Pancreatic Islets
Published on: July 18, 2019
Engineering Human Pancreatic RNase 1 as an Immunotherapeutic Agent for Cancer Therapy Through Computational and
Mohammadreza Nassiri1,2, Shahrokh Ghovvati3, Marzieh Gharouni4
1Department of Animal Science, College of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran.
Abstract:
Most plant and bacterial toxins are highly immunogenic with non-specific toxic effects. Human ribonucleases are thought to provide a promising basis for reducing the toxic agent's immunogenic properties, which are candidates for cancer therapy. In the cell, the ribonuclease inhibitor (RI) protein binds to the ribonuclease enzyme and forms a tight complex. This study aimed to engineer and provide a gene construct encoding an improved version of Human Pancreatic RNase 1 (HP-RNase 1) to reduce connection to RI and modulate the immunogenic effects of immunotoxins. To further characterize the interaction complex of HP-RNase 1 and RI, we established various in silico and in vitro approaches. These methods allowed us to specifically monitor interactions within native and engineered HP-RNase 1/RI complexes. In silico research involved molecular dynamics (MD) simulations of native and mutant HP-RNase 1 in their free form and when bound to RI. For HP-RNase 1 engineering, we designed five mutations (K8A/N72A/N89A/R92D/E112/A) based on literature studies, as this combination proved effective for the intended investigation. Then, the cDNA encoding HP-RNase 1 was generated by RT-PCR from blood and cloned into the pSYN2 expression vector. Consequently, wild-type and the engineered HP-RNase 1 were over-expressed in E. coli TG1 and purified using an IMAC column directed against a poly-his tag. The protein products were detected by SDS-PAGE and Western blot analysis. HP-RNase 1 catalytic activity, in the presence of various concentrations of RI, demonstrated that the mutated version of the protein is able to escape the ribonuclease inhibitor and target the RNA substrate 2.5 folds more than that of the wild type. From these data, we tend to suggest the engineered recombinant HP-RNase 1 potentially as a new immunotherapeutic agent for application in human cancer therapy.
Insights
Engineered Human Pancreatic RNase 1 (HP-RNase 1) shows improved cancer targeting by evading the ribonuclease inhibitor (RI). This enhanced protein exhibits 2.5-fold greater activity against RNA substrates, offering potential as a novel cancer immunotherapeutic agent.
Area of Science:
- Biochemistry
- Molecular Biology
- Immunology
Background:
- Plant and bacterial toxins are highly immunogenic with non-specific effects.
- Human ribonucleases (RNases) are candidates for cancer therapy due to reduced immunogenicity.
- Ribonuclease inhibitor (RI) binds to human RNases, forming a complex that can affect therapeutic efficacy.
Purpose of the Study:
- To engineer a modified Human Pancreatic RNase 1 (HP-RNase 1) with reduced binding to RI.
- To modulate the immunogenic effects of immunotoxins for enhanced cancer therapy.
- To characterize the interaction complex of native and engineered HP-RNase 1 with RI.
Main Methods:
- In silico molecular dynamics (MD) simulations of native and mutant HP-RNase 1.
- Engineering of HP-RNase 1 with five specific mutations (K8A/N72A/N89A/R92D/E112/A).
- Gene construct preparation, expression in E. coli, protein purification, SDS-PAGE, Western blot, and in vitro activity assays with RI.
Main Results:
- The engineered HP-RNase 1 demonstrated reduced interaction with RI.
- Mutated HP-RNase 1 exhibited 2.5-fold higher catalytic activity against RNA substrates compared to wild-type.
- The engineered protein successfully escaped the ribonuclease inhibitor.
Conclusions:
- The engineered recombinant HP-RNase 1 shows potential as a novel immunotherapeutic agent for human cancer therapy.
- Reduced RI binding enhances the efficacy of HP-RNase 1 as an anti-cancer agent.
- This study provides a basis for developing improved RNase-based immunotoxins.
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