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Zoish: A Novel Feature Selection Approach Leveraging Shapley Additive Values for Machine Learning Applications in
Hossein Javedani Sadaei1, Salvatore Loguercio, Mahdi Shafiei Neyestanak
1Scripps Research Translational Institute, and Department of Integrative Structural and Computational Biology, Scripps Research, La Jolla, CA 92037, USA www.scripps.edu, hjavedani@scripps.edu.
Zoish, a novel feature selection tool, uses Shapley values for transparent and automated model building in healthcare analytics. It enhances predictive accuracy across diverse datasets and machine learning models.
Area of Science:
- Healthcare Analytics
- Machine Learning
- Cooperative Game Theory
Background:
- Effective feature selection is critical for robust predictive models in healthcare analytics.
- Challenges include small sample sizes and potential data biases.
- Existing tools often lack transparency and automation in feature selection.
Purpose of the Study:
- To introduce Zoish, a tool for transparent and automated feature selection using Shapley values.
- To demonstrate Zoish's versatility across various machine learning libraries and dataset sizes.
- To enhance interpretability and user control in healthcare predictive modeling.
Main Methods:
- Employs Shapley additive values derived from cooperative game theory for feature selection.
- Features a dual algorithmic approach for efficient Shapley value calculation on large and small datasets.
- Integrates seamlessly with scikit-learn, XGBoost, CatBoost, and imbalanced-learn.
Main Results:
- Zoish provides transparent and automated feature selection, improving model robustness.
- Demonstrated adaptability and efficiency in case studies for breast cancer and Parkinson's disease (Montreal Cognitive Assessment - MoCA) prediction.
- Evaluated on 300 synthetic datasets, showing superior performance compared to counterparts.
Conclusions:
- Zoish offers a unique, streamlined process combining local and global feature selection.
- Its interpretability features and customizable settings optimize predictive objectives.
- Zoish is highly suitable for diverse healthcare analytics tasks, enhancing predictive model development.
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