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Pooled CRISPR-Based Genetic Screens in Mammalian Cells
Published on: September 4, 2019
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Application of CRISPR/Cas9 Pooled Screening for a Non-immediate Readout Model
1Department of Biological Sciences, Middle East Technical University, Ankara, Turkey. nterzi@metu.edu.tr.
Methods in Molecular Biology (Clifton, N.J.)
|March 5, 2024
Summary
This study details a CRISPR/Cas9 pooled screening protocol for identifying genetic components linked to complex phenotypes. The method offers robust and unbiased data for drug discovery, particularly for non-immediate readouts.
Area of Science:
- Genomics
- Drug Discovery
- Molecular Biology
Background:
- Phenotype-genotype correlations are crucial for novel drug discovery.
- Screening methods, including pooled and arrayed formats, are widely used.
- CRISPR/Cas9 technology offers an adaptable alternative to classical and RNAi screening.
Purpose of the Study:
- To present a protocol for CRISPR/Cas9-based pooled screening.
- To apply this method for identifying genetic components associated with non-binary, non-immediate phenotypes.
- To leverage high-throughput sequencing and bioinformatics for robust data analysis.
Main Methods:
- CRISPR/Cas9-based pooled screening.
- High-throughput sequencing.
- Bioinformatics analysis for data interpretation.
Main Results:
- The protocol enables unbiased and robust data generation.
- Successfully applied to a non-binary and non-immediate readout.
- Demonstrates the utility of CRISPR/Cas9 pooled screening for complex genetic studies.
Conclusions:
- CRISPR/Cas9 pooled screening is a powerful tool for genetic studies.
- This protocol facilitates the discovery of genetic links to complex phenotypes.
- The method supports large-scale screening for drug discovery and biological research.
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