Related Experiment Video
Updated: Jul 10, 2026

Using Tomoauto: A Protocol for High-throughput Automated Cryo-electron Tomography
Published on: January 30, 2016
Effective alignment method using a diamond notch knife for correlative array tomography.
Yumi Goto1, Noriko Takeda-Kamiya1, Kaori Yamaguchi2
1Mass Spectrometry and Microscopy Unit, RIKEN Center for Sustainable Resource Science, Suehiro-cho 1-7-22, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.
Researchers developed a novel diamond notch knife to improve 3D ultrastructural imaging. This tool aids in aligning microscopy images and serial sections for biological specimens in correlative array tomography.
Area of Science:
- Cell Biology
- Microscopy Techniques
- Biotechnology
Background:
- Correlative array tomography integrates light and electron microscopy for 3D ultrastructural analysis.
- Challenges exist in aligning images and serial sections, especially for irregularly shaped biological samples.
Purpose of the Study:
- To introduce a new tool, the diamond notch knife, for enhancing correlative array tomography.
- To overcome difficulties in image and serial section alignment in 3D biological imaging.
Main Methods:
- Development of a diamond notch knife with a triangular, right-angled tip diamond needle.
- Application of the diamond needle to puncture holes in the polished block face of specimens.
- Utilizing the tool for improved alignment in serial sectioning for array tomography.
Main Results:
- The diamond notch knife facilitates the creation of precise holes for specimen orientation.
- Demonstrated utility of the tool in the context of correlative array tomography workflows.
- Potential for improved accuracy in 3D ultrastructural visualization and molecular mapping.
Conclusions:
- The diamond notch knife is an effective new tool for correlative array tomography.
- This innovation addresses key challenges in serial section alignment for complex biological structures.
- The tool offers enhanced capabilities for high-resolution 3D biological imaging.
More Related Videos
09:45Large-area Scanning Probe Nanolithography Facilitated by Automated Alignment and Its Application to Substrate Fabrication for Cell Culture Studies
Published on: June 12, 2018
09:47Array Tomography Workflow for the Targeted Acquisition of Volume Information using Scanning Electron Microscopy
Published on: July 15, 2021