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Deceptive learning in histopathology
Sahar Shahamatdar1,2, Daryoush Saeed-Vafa3, Drew Linsley4,5
1Center for Computational Molecular Biology, Brown University, Providence, RI, USA.
Histopathology
|April 1, 2024
Summary
Deep neural networks (DNNs) show promise in histopathology but can learn deceptive strategies. While trustworthy for tumor detection, DNNs failed to generalize for molecular profiling due to spurious correlations.
Area of Science:
- Computational pathology
- Artificial intelligence in medicine
- Histopathology image analysis
Background:
- Deep learning (DL) offers potential for automating histopathology tasks and discovering novel biological insights.
- Systematic evaluation of the trustworthiness of visual strategies learned by DL models in histopathology is lacking.
Purpose of the Study:
- To systematically evaluate deep neural networks (DNNs) trained for histopathological analysis.
- To determine if DNNs' learned strategies are trustworthy or deceptive.
Main Methods:
- Trained various DNNs on 221 whole-slide images (WSIs) of lung adenocarcinoma.
- Evaluated DNNs on molecular profiling (KRAS vs. EGFR mutations), primary tissue determination, and tumor detection.
Main Results:
- DNNs achieved above-chance performance in molecular profiling by exploiting correlations between histological subtypes and mutations, failing to generalize to laser capture microdissection (LCM) test sets.
- DNNs learned robust and trustworthy strategies for primary tissue determination and tumor detection/localization.
Conclusions:
- DNNs show promise for aiding pathologists but can learn deceptive strategies using spurious correlations, rendering them unsuitable for research or clinical use.
- A proposed framework for model evaluation and interpretation is crucial for developing reliable automated histopathological analysis systems.
Keywords:
KRAScomputational pathologydeep learningexplainable artificial intelligencemolecular profiling
