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Related Concept Videos

Types of RNA01:23

Types of RNA

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Overview
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
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RNA Interference01:23

RNA Interference

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RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
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Experimental RNAi02:15

Experimental RNAi

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RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
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siRNA - Small Interfering RNAs02:30

siRNA - Small Interfering RNAs

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Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
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Riboswitches01:56

Riboswitches

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Riboswitches are non-coding mRNA domains that regulate the transcription and translation of downstream genes without the help of proteins. Riboswitches bind directly to a metabolite and can form unique stem-loop or hairpin structures in response to the amount of the metabolite present. They have two distinct regions – a metabolite-binding aptamer and an expression platform.
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Updated: Jun 28, 2025

Using In Vitro and In-cell SHAPE to Investigate Small Molecule Induced Pre-mRNA Structural Changes
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Using In Vitro and In-cell SHAPE to Investigate Small Molecule Induced Pre-mRNA Structural Changes

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Heterobifunctional small molecules to modulate RNA function.

Sandra Kovachka1, Yuquan Tong2, Jessica L Childs-Disney1

  • 1Department of Chemistry, The Herbert Wertheim UF Scripps Institute for Biomedical Innovation and Technology, 130 Scripps Way, Jupiter, FL 33458, USA.

Trends in Pharmacological Sciences
|April 19, 2024
PubMed
Summary
This summary is machine-generated.

Heterobifunctional compounds offer enhanced RNA targeting by covalently modifying RNA structures. This review highlights recent advancements and future directions for these potent RNA-modulating molecules.

Keywords:
RNAchimerasdrug designheterobifunctionalsmall moleculestranscriptome

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Area of Science:

  • Biochemistry
  • Molecular Biology
  • Chemical Biology

Background:

  • Ribonucleic acid (RNA) performs diverse cellular functions, including gene regulation and protein synthesis, through complex structural interactions.
  • Small molecules targeting RNA structures have emerged, but simple binding often lacks sufficient biological activity.
  • Heterobifunctional compounds represent a novel strategy to overcome limitations of simple RNA binders.

Purpose of the Study:

  • To review recent progress in RNA-targeted heterobifunctional compounds.
  • To showcase representative case studies of these compounds.
  • To identify limitations and propose future development strategies for enhanced RNA-targeted molecules.

Main Methods:

  • Literature review of recent advancements in RNA-targeted heterobifunctional compounds.
  • Analysis of representative case studies demonstrating compound efficacy.
  • Identification of critical gaps and limitations in the current field.

Main Results:

  • Heterobifunctional compounds can covalently bind to RNA targets, alter RNA sequence, or induce RNA cleavage.
  • These compounds demonstrate augmented functionalities compared to simple RNA binders.
  • Representative case studies illustrate the potential of this therapeutic modality.

Conclusions:

  • RNA-targeted heterobifunctional compounds show significant promise for modulating RNA function.
  • Further development is needed to address current limitations and optimize molecular design.
  • A strategic pathway for future advancements in RNA-targeted therapeutics is proposed.