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Automatic Segmentation and Alignment of Uterine Shapes from 3D Ultrasound Data
Eva Boneš1, Marco Gergolet2, Ciril Bohak3
1University of Ljubljana, Faculty of Computer and Information Science, Večna pot 113, Ljubljana, 1000, Slovenia.
Computers in Biology and Medicine
|June 28, 2024
Summary
This study establishes the normal uterine shape using 3D ultrasound data and deep learning. The automated system accurately segments and aligns uterine shapes, aiding research into infertility and miscarriage causes.
Area of Science:
- Medical Imaging
- Artificial Intelligence in Medicine
- Reproductive Medicine
Background:
- Uterine shape is crucial for fertility and pregnancy outcomes.
- Existing uterine shape classifications lack real-world measurements and large datasets.
- 3D ultrasound advances offer improved gynecological healthcare exploration.
Purpose of the Study:
- To establish the normal uterine shape using real-world 3D vaginal ultrasound scans.
- To fill the gap in large-scale uterine shape studies.
- To facilitate research into uterine shape abnormalities linked to infertility and recurrent miscarriages.
Main Methods:
- Developed an automated system for uterine shape segmentation and alignment from 3D ultrasound data.
- Employed deep learning for automatic uterine segmentation.
- Utilized standard geometrical approaches for shape alignment.
Main Results:
- The automated system achieved high accuracy in segmenting and aligning uterine shapes.
- Segmentation achieved an average Dice Similarity Coefficient (DSC) of 0.90.
- The alignment method showed minimal translation and rotation errors, yielding a preliminary average shape consistent with expert findings.
Conclusions:
- An automated approach for uterine shape segmentation and alignment from 3D ultrasound data was presented.
- A deep learning model (nnU-Net) achieved high accuracy.
- A publicly available dataset of 3D transvaginal ultrasound volumes with manual annotations was created to support further research.

