Related Experiment Video
Updated: Jun 10, 2025

09:36
RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
25.2K
Long non-coding RNA GRASLND links melanoma differentiation and interferon-gamma response
Kim Denise Fischer1,2, Shashank Tiwari1, Beatrice Thier3
1Chemical Genomics Centre, Max Planck Institute of Molecular Physiology, Dortmund, Germany.
Frontiers in Molecular Biosciences
|October 14, 2024
Summary
Long non-coding RNA GRASLND promotes melanoma invasion and immune evasion. Silencing GRASLND in melanoma cells enhances anti-tumor immunity by boosting interferon-gamma signaling and antigen presentation.
Area of Science:
- Oncology
- Molecular Biology
- Immunology
Background:
- Melanoma, a lethal skin cancer, exhibits plasticity, contributing to growth, metastasis, and treatment resistance.
- Long non-coding RNAs (lncRNAs) are implicated in regulating cellular processes, but their specific roles in melanoma plasticity remain largely unexplored.
Purpose of the Study:
- To investigate the role of lncRNA GRASLND in melanoma differentiation, plasticity, and immune signaling.
- To elucidate the mechanism by which GRASLND influences melanoma cell behavior and response to interferon-gamma (IFNγ).
Main Methods:
- Knockdown of lncRNA GRASLND in melanoma cell lines.
- Analysis of cell differentiation, proliferation, invasion, and gene expression.
- Assessment of GRASLND expression in melanoma tumors and correlation with clinical data and immune signatures.
Main Results:
- GRASLND knockdown induced a shift from differentiated to dedifferentiated, invasive melanoma cells.
- GRASLND is overexpressed in differentiated melanomas and linked to poor prognosis.
- GRASLND suppresses interferon-gamma (IFNγ) signaling and reduces the expression of IFNγ-stimulated genes, including HLA-I.
Conclusions:
- Elevated GRASLND expression in differentiated melanomas hinders anti-tumor immunity by interfering with IFNγ signaling.
- GRASLND plays a significant role in melanoma immune evasion and represents a potential therapeutic target.
Related Concept Videos
lncRNA - Long Non-coding RNAs
8.5K
In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
8.5K
Non-LTR Retrotransposons
11.4K
As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
11.4K
MicroRNAs
3.0K
MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
3.0K
Leaky Scanning
5.1K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.1K
siRNA - Small Interfering RNAs
16.6K
Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
16.6K
Exon Recombination
3.6K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon...
Exon shuffling follows “splice frame rules.” Each exon...
3.6K

