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A novel likely pathogenic germline variant in CDKN1B in a patient with MEN4 and medullary thyroid cancer
Fernández Mercè1,2, Queralt Asla3,4, Francisco J Illana5
1Department of Endocrinology and Nutrition, Institut de Recerca Sant Pau (IR SANTPAU), Endo-ERN. Hospital de la Santa Creu i Sant Pau, Barcelona, Spain. mfmiro79@gmail.com.
Abstract:
Multiple endocrine neoplasia type 4 (MEN4) is caused by a germline CDKN1B deleterious variant. CDKN1B encodes p27Kip1, a cyclin-dependent kinase inhibitor that acts as tumor-suppressor. Clinical presentation of MEN4 is similar to multiple endocrine neoplasia type 1 (MEN1) but the diagnosis of MEN4 can only be established once a germline CDKN1B pathogenic variant has been confirmed. We describe a unique case presenting with two -rare endocrine conditions. A 59-year-old female patient was diagnosed with medullary thyroid cancer (MTC) without evidence of a germline pathogenic variant in the RET proto-oncogene. Five years later, she developed Cushing's disease. A heterozygous germline variant was identified in the CDKN1B gene, specifically c.536del (p.Prol179GlnfsTer46), corresponding to a single-nucleotide deletion at position 536. This variant induces a frameshift, leading to an alternative stop codon. Immunostaining of the pituitary and thyroid tumors revealed a weak nuclear expression of p27/Kip1 without significant differences of expression between tumor and non-tumoral tissues. The NGS panel (Oncomine Comprehensive Assay v3) performed in both MTC and pituitary tissues identified the germline CDKN1B variant, as well as a pathogenic missense somatic variant c.182 A > G, p.(Gln61Arg) in HRAS in the MTC, without any RET somatic pathogenic variant. Evaluation of loss of heterozygosity (LOH) in both MTC and pituitary tissues showed compatibility with copy-neutral LOH, although further evidence is required for definitive confirmation. In conclusion, we report a clinical case of MTC coexisting with MEN4 due to a novel CDKN1B germline heterozygote frameshift variant.
Insights
Multiple Endocrine Neoplasia type 4 (MEN4) is linked to CDKN1B gene variants. This case highlights a novel CDKN1B variant causing MEN4 and medullary thyroid cancer, emphasizing genetic testing for rare endocrine conditions.
Area of Science:
- Endocrinology
- Genetics
- Oncology
Background:
- Multiple Endocrine Neoplasia type 4 (MEN4) is a rare genetic disorder caused by germline variants in the CDKN1B gene, encoding the tumor suppressor p27Kip1.
- MEN4 shares clinical similarities with MEN1, necessitating genetic confirmation for diagnosis.
- p27Kip1 plays a crucial role in cell cycle regulation and tumor suppression.
Purpose of the Study:
- To report a unique clinical case of a patient presenting with medullary thyroid cancer (MTC) and Cushing's disease.
- To identify the genetic basis of the patient's rare endocrine conditions.
- To characterize the identified genetic variants and their potential impact on tumor development.
Main Methods:
- Clinical case presentation and detailed patient history.
- Germline and somatic genetic variant analysis using Next-Generation Sequencing (NGS) panels (Oncomine Comprehensive Assay v3).
- Immunohistochemical analysis of p27/Kip1 expression in tumor tissues.
- Evaluation of Loss of Heterozygosity (LOH).
Main Results:
- A novel heterozygous germline CDKN1B frameshift variant (c.536del) was identified, confirming a diagnosis of MEN4.
- The patient had MTC without a germline RET variant and subsequently developed Cushing's disease.
- A pathogenic somatic HRAS variant (c.182A>G, p.(Gln61Arg)) was found in the MTC, alongside the germline CDKN1B variant. Weak p27/Kip1 nuclear expression was observed in tumors.
Conclusions:
- This study reports a novel CDKN1B germline variant associated with MEN4, presenting with MTC and Cushing's disease.
- The coexistence of MTC, Cushing's disease, and a novel CDKN1B variant underscores the importance of comprehensive genetic evaluation in patients with rare endocrine tumors.
- The findings contribute to understanding the genetic landscape of MEN4 and its phenotypic variability.
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