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Updated: May 16, 2025

Rare Event Detection Using Error-corrected DNA and RNA Sequencing
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REPrise: de novo interspersed repeat detection using inexact seeding

Atsushi Takeda1,2, Daisuke Nonaka3, Yuta Imazu4

  • 1Department of Electrical Engineering and Bioscience, Graduate School of Advanced Science and Engineering, Waseda University, Tokyo, 1698555, Japan.

Mobile DNA
|April 4, 2025
PubMed
Summary

REPrise is a new software for detecting interspersed repeats in genomes. It improves accuracy, especially for mutated sequences, enhancing genome analysis and discovery of novel repeat families.

Keywords:
De novo repeat detectionInexact seedREPriseSeed-and-extend

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