Related Experiment Video
Updated: May 10, 2025

Quantification of Information Encoded by Gene Expression Levels During Lifespan Modulation Under Broad-range Dietary Restriction in C. elegans
Published on: August 16, 2017
Information Gain Limit of Biomolecular Computation
Easun Arunachalam1, Milo M Lin2
1University of Texas Southwestern Medical Center, Harvard University, Department of Molecular and Cellular Biology, Cambridge, Massachusetts 02138, USA and Green Center for Systems Biology and Lyda Hill Department of Bioinformatics, Dallas, Texas 75390, USA.
Abstract:
Biomolecules stochastically occupy different configurations that correspond to distinct functional states. Changing biochemical inputs such as rate constants alters the output probability distribution of configurations, and thus constitutes a form of computation. In the cell, such computations are often coupled to thermodynamic forces such as ATP hydrolysis that drive systems far from equilibrium, resulting in energy expenditure even during times when computations are not being performed. The information-theoretic advantage of this costly computational paradigm is unclear. Here we introduce a theoretical framework showing how much the thermodynamic force enables changes in probability distributions, quantified by the information gain, beyond what is possible at equilibrium. Using this framework, we derive a general expression relating the force to the maximum information gain in an arbitrary computation, revealing how small input changes can exponentially alter outputs. We numerically show that biomolecular systems can closely approach this universal bound, illustrating how energy expenditure is needed to achieve the information processing capabilities observed in nature.
Related Concept Videos
Genomics
Maxam-Gilbert Sequencing
Challenges of the Maxam-Gilbert Method
The...
The Central Dogma
RNA is the Missing Link Between DNA and Proteins
In the early 1900s, scientists discovered that DNA stores all the information needed for cellular functions and that proteins perform most of these functions. However, the mechanisms of converting genetic information into functional proteins remained unknown for many years. Initially, it was believed that a single gene is...
Real Time RT-PCR
The real-time quantification of the number of amplified products is...
Improving Translational Accuracy
Protein Networks
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...

