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Protein Dynamics in Living Cells01:19

Protein Dynamics in Living Cells

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Different fluorescence-based techniques are used to study the protein dynamics in living cells. These techniques include FRAP, FRET, and PET.
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
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Exploring Endoplasmic Reticulum Dysfunction on Protein Phase Separation Using Viscosity-Sensitive Fluorescent

Yu Wei1, Xiangyu Zi1, Jia Zhai1

  • 1School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 1 Wenyuan Road, Nanjing 210023, China.

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New probes visualize protein phase transitions linked to degenerative diseases. Researchers found calcium ions (Ca2+) regulate TDP-43 aggregation, offering potential therapeutic insights.

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Area of Science:

  • Biochemistry and Molecular Biology
  • Cellular Biology
  • Neuroscience

Background:

  • Protein phase transitions are implicated in degenerative diseases.
  • Endoplasmic reticulum (ER) homeostasis imbalance triggers these transitions.
  • Monitoring ER microenvironment changes is vital for studying protein phase behavior.

Purpose of the Study:

  • Develop novel viscosity-sensitive probes for monitoring ER microenvironment.
  • Investigate the role of ER stress and Ca2+ signaling in TDP-43 protein phase separation.
  • Provide tools for understanding degenerative disease mechanisms.

Main Methods:

  • Developed dicyanomethylene-4H-pyran (VisDCM) based viscosity-sensitive fluorescent probes.
  • Utilized computational analysis to understand probe fluorescence activation mechanisms.
  • Designed dual-color probes for simultaneous ER and protein visualization.
  • Performed in vitro experiments and fluorescence lifetime imaging.

Main Results:

  • VisDCM probes exhibit dual fluorescence response to viscosity, activated by restricted accessible conical intersection.
  • ER stress regulates TDP-43 protein phase separation via Ca2+ signaling.
  • Increased Ca2+ promotes TDP-43 liquid-liquid phase separation and aggregation.
  • Fluorescence lifetime imaging successfully mapped ER stress-induced microenvironment changes.

Conclusions:

  • VisDCM probes offer a novel toolbox for visualizing protein phase transitions.
  • Ca2+ plays a critical role in TDP-43 phase separation and aggregation.
  • Findings provide insights into degenerative diseases and potential therapeutic strategies.